| A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014 | 1819 | 2014 |
| Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1633 | 2005 |
| Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature methods 13 (4), 310-318, 2016 | 264 | 2016 |
| Enter the matrix: factorization uncovers knowledge from omics GL Stein-O’Brien, R Arora, AC Culhane, AV Favorov, LX Garmire, ... Trends in Genetics 34 (10), 790-805, 2018 | 250 | 2018 |
| A Markov chain Monte Carlo technique for identification of combinations of allelic variants underlying complex diseases in humans AV Favorov, TV Andreewski, MA Sudomoina, OO Favorova, G Parmigiani, ... Genetics 171 (4), 2113-2121, 2005 | 208 | 2005 |
| Exploring massive, genome scale datasets with the GenometriCorr package A Favorov, L Mularoni, LM Cope, Y Medvedeva, AA Mironov, VJ Makeev, ... PLoS computational biology 8 (5), e1002529, 2012 | 203 | 2012 |
| A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ... Bioinformatics 21 (10), 2240-2245, 2005 | 189 | 2005 |
| Deep and wide digging for binding motifs in ChIP-Seq data IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev Bioinformatics 26 (20), 2622-2623, 2010 | 188 | 2010 |
| Functional annotation of human long noncoding RNAs via molecular phenotyping JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... Genome research 30 (7), 1060-1072, 2020 | 160 | 2020 |
| Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation H Morikawa, N Ohkura, A Vandenbon, M Itoh, S Nagao-Sato, H Kawaji, ... Proceedings of the National Academy of Sciences 111 (14), 5289-5294, 2014 | 156 | 2014 |
| A polygenic approach to the study of polygenic diseases D Lvovs, OO Favorova, AV Favorov Acta Naturae (англоязычная версия) 4 (3 (14)), 59-71, 2012 | 153 | 2012 |
| Epigenetic regulation of gene expression in cancer: techniques, resources and analysis LT Kagohara, GL Stein-O’Brien, D Kelley, E Flam, HC Wick, LV Danilova, ... Briefings in functional genomics 17 (1), 49-63, 2018 | 143 | 2018 |
| A review of genome-wide association studies for multiple sclerosis: classical and hypothesis-driven approaches VV Bashinskaya, OG Kulakova, AN Boyko, AV Favorov, OO Favorova Human genetics 134, 1143-1162, 2015 | 133 | 2015 |
| Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction HS Parker, JT Leek, AV Favorov, M Considine, X Xia, S Chavan, ... Bioinformatics 30 (19), 2757-2763, 2014 | 127 | 2014 |
| CoGAPS: an R/C++ package to identify patterns and biological process activity in transcriptomic data EJ Fertig, J Ding, AV Favorov, G Parmigiani, MF Ochs Bioinformatics 26 (21), 2792-2793, 2010 | 110 | 2010 |
| HPV E2, E4, E5 drive alternative carcinogenic pathways in HPV positive cancers S Ren, DA Gaykalova, T Guo, AV Favorov, EJ Fertig, P Tamayo, ... Oncogene 39 (40), 6327-6339, 2020 | 95 | 2020 |
| Landscape of allele-specific transcription factor binding in the human genome S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ... Nature communications 12 (1), 2751, 2021 | 91 | 2021 |
| Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers M Ando, Y Saito, G Xu, NQ Bui, K Medetgul-Ernar, M Pu, K Fisch, S Ren, ... Nature communications 10 (1), 2188, 2019 | 91 | 2019 |
| Transcriptional mechanisms of resistance to anti–PD-1 therapy ML Ascierto, A Makohon-Moore, EJ Lipson, JM Taube, TL McMiller, ... Clinical cancer research 23 (12), 3168-3180, 2017 | 81 | 2017 |
| RNAKinetics: a web server that models secondary structure kinetics of an elongating RNA LV Danilova, DD Pervouchine, AV Favorov, AA Mironov Journal of bioinformatics and computational biology 4 (02), 589-596, 2006 | 78 | 2006 |
Elana J FertigDirector of Institute for Genome Sciences, University of Maryland School of MedicineVerified email at som.umaryland.edu
