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Adam Mark
Adam Mark
Senior Bioinformatics Scientist
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission
S Karthikeyan, JI Levy, P De Hoff, G Humphrey, A Birmingham, K Jepsen, ...
Nature 609 (7925), 101-108, 2022
3752022
High-performance web services for querying gene and variant annotation
J Xin, A Mark, C Afrasiabi, G Tsueng, M Juchler, N Gopal, GS Stupp, ...
Genome biology 17, 1-7, 2016
2032016
FAK activity sustains intrinsic and acquired ovarian cancer resistance to platinum chemotherapy
CJ Diaz Osterman, D Ozmadenci, EG Kleinschmidt, KN Taylor, AM Barrie, ...
Elife 8, e47327, 2019
1192019
A structurally distinct human mycoplasma protein that generically blocks antigen-antibody union
RK Grover, X Zhu, T Nieusma, T Jones, I Boero, AS MacLeod, A Mark, ...
Science 343 (6171), 656-661, 2014
1082014
Chromatin dysregulation and DNA methylation at transcription start sites associated with transcriptional repression in cancers.
CJA Ando M, Saito Y, Xu G, Bui NQ, Medetgul-Ernar K, Pu M, Fisch K, Ren S ...
Nature Communications, 2019
912019
Transient genomic instability drives tumorigenesis through accelerated clonal evolution
O Shoshani, B Bakker, L De Haan, AE Tijhuis, Y Wang, DH Kim, ...
Genes & development 35 (15-16), 1093-1108, 2021
712021
H3K27 methylation dynamics during CD4 T cell activation: regulation of JAK/STAT and IL12RB2 expression by JMJD3
SA LaMere, RC Thompson, X Meng, HK Komori, A Mark, DR Salomon
The Journal of Immunology 199 (9), 3158-3175, 2017
442017
Variant STAT4 and Response to Ruxolitinib in an Autoinflammatory Syndrome
H Baghdassarian, SA Blackstone, OS Clay, R Philips, B Matthiasardottir, ...
New England Journal of Medicine 388 (24), 2241-2252, 2023
412023
Inflammation-driven deaminase deregulation fuels human pre-leukemia stem cell evolution
Q Jiang, J Isquith, L Ladel, A Mark, F Holm, C Mason, Y He, P Mondala, ...
Cell reports 34 (4), 2021
352021
Mutation of chromatin regulators and focal hotspot alterations characterize human papillomavirus–positive oropharyngeal squamous cell carcinoma
S Haft, S Ren, G Xu, A Mark, K Fisch, TW Guo, Z Khan, J Pang, M Ando, ...
Cancer 125 (14), 2423-2434, 2019
342019
Promoter H3K4 methylation dynamically reinforces activation-induced pathways in human CD4 T cells
SA LaMere, RC Thompson, HK Komori, A Mark, DR Salomon
Genes & Immunity 17 (5), 283-297, 2016
342016
Safer at school early alert: an observational study of wastewater and surface monitoring to detect COVID-19 in elementary schools
R Fielding-Miller, S Karthikeyan, T Gaines, RS Garfein, RA Salido, ...
The Lancet Regional Health–Americas 19, 2023
212023
Wu, C. mygene: Access MyGene
A Mark, R Thompson, C Afrasiabi
Info_ services. R package version 1 (0), 2019
182019
Metastatic triple-negative breast cancer patient with TP53 tumor mutation experienced 11 months progression-free survival on bortezomib monotherapy without adverse events after …
T Meißner, A Mark, C Williams, WE Berdel, S Wiebe, A Kerkhoff, ...
Molecular Case Studies 3 (4), a001677, 2017
182017
Detection and targeting of splicing deregulation in pediatric acute myeloid leukemia stem cells
I van Der Werf, PK Mondala, SK Steel, L Balaian, L Ladel, CN Mason, ...
Cell Reports Medicine 4 (3), 2023
162023
Nuclear Parkin activates the ERRα transcriptional program and drives widespread changes in gene expression following hypoxia
SE Shires, JM Quiles, RH Najor, LJ Leon, MQ Cortez, MA Lampert, ...
Scientific Reports 10 (1), 8499, 2020
162020
Wastewater and surface monitoring to detect COVID-19 in elementary school settings: The Safer at School Early Alert project
R Fielding-Miller, S Karthikeyan, T Gaines, RS Garfein, RA Salido, ...
medRxiv, 2021.10. 19.21265226, 2023
152023
mygene: Access MyGene. Info_ services
A Mark, R Thompson, C Afrasiabi, C Wu
R package version 1.20. 0, 2019
132019
MyGene. info: gene annotation query as a service
C Wu, A Mark, AI Su
bioRxiv, 009332, 2014
92014
Malignant A-to-I RNA editing by ADAR1 drives T cell acute lymphoblastic leukemia relapse via attenuating dsRNA sensing
M Rivera, H Zhang, J Pham, J Isquith, QJ Zhou, L Balaian, R Sasik, ...
Cell reports 43 (2), 2024
62024
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