Oliver Beckstein

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Mark S.P. SansomUniversity of OxfordVerified email at bioch.ox.ac.uk
David L. DotsonDatryllic LLCVerified email at datryllic.com
Sean L SeylerSchool of Molecular Sciences, Arizona State UniversityVerified email at asu.edu
Ian Michael KenneyPostdoctoral Research Scholar, Arizona State UniversityVerified email at asu.edu
Bogdan I. IORGACNRS Research Director (DR2), ICSN, CNRS, Université Paris-SaclayVerified email at cnrs.fr
Jan DomańskiCharm TherapeuticsVerified email at charmtx.com
Alexander CameronProfessor, University of WarwickVerified email at warwick.ac.uk
Jonathan BarnoudCentro Singular de Investigación en Tecnoloxías Intelixentes (CiTIUS) Universidade de Santiago deVerified email at usc.es
Gus L. W. HartBrigham Young University, Physics and AstronomyVerified email at byu.edu
Peter J F HendersonUniversity of LeedsVerified email at leeds.ac.uk
David DrewStockholm UniversityVerified email at dbb.su.se
Max LinkeVerified email at biophys.mpg.de
Shujie FanIOCB PragueVerified email at asu.edu
Christoph von BallmoosUniversity of Berne, SwitzerlandVerified email at dcb.unibe.ch
Philip C. BigginProfessor of Computational Biochemistry, University of OxfordVerified email at bioch.ox.ac.uk
Richard J GowersOpen Molecular Software FoundationVerified email at omsf.io
Tyler ReddyStaff Scientist, Los Alamos National LaboratoryVerified email at lanl.gov
Sébastien BuchouxUniversité Picardie Jules VerneVerified email at u-picardie.fr
Manuel N. MeloITQB NOVAVerified email at itqb.unl.pt
Shantenu JhaRutgers University and Brookhaven National LaboratoryVerified email at rutgers.edu

Oliver Beckstein

Center for Biological Physics, Department of Physics, Arizona State University

Verified email at asu.edu - Homepage

computational biophysics membrane proteins transporter water


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MDAnalysis: a toolkit for the analysis of molecular dynamics simulations N Michaud‐Agrawal, EJ Denning, TB Woolf, O Beckstein Journal of computational chemistry 32 (10), 2319-2327, 2011	3042	2011
MDAnalysis: A Python package for the rapid analysis of molecular dynamics simulations RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ... Proceedings of the 15th Python in Science Conference, 102--109, 2016	1392	2016
First-principles elastic constants and electronic structure of and PtSi O Beckstein, JE Klepeis, GLW Hart, O Pankratov Physical Review B 63 (13), 134112, 2001	502	2001
Liquid–vapor oscillations of water in hydrophobic nanopores O Beckstein, MSP Sansom Proceedings of the National Academy of Sciences 100 (12), 7063-7068, 2003	501	2003
A hydrophobic gating mechanism for nanopores O Beckstein, PC Biggin, MSP Sansom The Journal of Physical Chemistry B 105 (51), 12902-12905, 2001	337	2001
Molecular basis of alternating access membrane transport by the sodium-hydantoin transporter Mhp1 T Shimamura, S Weyand, O Beckstein, NG Rutherford, JM Hadden, ... Science 328 (5977), 470-473, 2010	330	2010
The influence of geometry, surface character, and flexibility on the permeation of ions and water through biological pores O Beckstein, MSP Sansom Physical biology 1 (1), 42, 2004	281	2004
A two-domain elevator mechanism for sodium/proton antiport C Lee, HJ Kang, C Von Ballmoos, S Newstead, P Uzdavinys, DL Dotson, ... Nature 501 (7468), 573-577, 2013	265	2013
Not ions alone: barriers to ion permeation in nanopores and channels O Beckstein, K Tai, MSP Sansom Journal of the American Chemical Society 126 (45), 14694-14695, 2004	229	2004
A hydrophobic gate in an ion channel: the closed state of the nicotinic acetylcholine receptor O Beckstein, MSP Sansom Physical biology 3 (2), 147, 2006	223	2006
Lipidbook: a public repository for force-field parameters used in membrane simulations J Domański, PJ Stansfeld, MSP Sansom, O Beckstein The Journal of membrane biology 236, 255-258, 2010	180	2010
Zipping and unzipping of adenylate kinase: atomistic insights into the ensemble of open↔ closed transitions O Beckstein, EJ Denning, JR Perilla, TB Woolf Journal of molecular biology 394 (1), 160-176, 2009	164	2009
Ion channel gating: insights via molecular simulations O Beckstein, PC Biggin, P Bond, JN Bright, C Domene, A Grottesi, ... FEBS letters 555 (1), 85-90, 2003	162	2003
Mechanism of pH-dependent activation of the sodium-proton antiporter NhaA Y Huang, W Chen, DL Dotson, O Beckstein, J Shen Nature communications 7 (1), 12940, 2016	103	2016
Crystal structure of the sodium–proton antiporter NhaA dimer and new mechanistic insights C Lee, S Yashiro, DL Dotson, P Uzdavinys, S Iwata, MSP Sansom, ... Journal of General Physiology 144 (6), 529-544, 2014	99	2014
Crystal structures reveal the molecular basis of ion translocation in sodium/proton antiporters M Coincon, P Uzdavinys, E Nji, DL Dotson, I Winkelmann, ... Nature structural & molecular biology 23 (3), 248-255, 2016	95	2016
Flexible gates generate occluded intermediates in the transport cycle of LacY LS Stelzl, PW Fowler, MSP Sansom, O Beckstein Journal of molecular biology 426 (3), 735-751, 2014	80	2014
Path similarity analysis: a method for quantifying macromolecular pathways SL Seyler, A Kumar, MF Thorpe, O Beckstein PLoS computational biology 11 (10), e1004568, 2015	74	2015
Molecular mechanism of ligand recognition by membrane transport protein, Mhp1 KJ Simmons, SM Jackson, F Brueckner, SG Patching, O Beckstein, ... The EMBO journal 33 (16), 1831-1844, 2014	73	2014
Proceedings of the 15th python in science conference RJ Gowers, M Linke, J Barnoud, TJE Reddy, MN Melo, SL Seyler, ... Austin, TX, 2016	71	2016

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