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Gabdank Idan
Gabdank Idan
Verified email at stanford.edu - Homepage
Title
Cited by
Cited by
Year
The Encyclopedia of DNA elements (ENCODE): data portal update
CA Davis, BC Hitz, CA Sloan, ET Chan, JM Davidson, I Gabdank, ...
Nucleic acids research 46 (D1), D794-D801, 2018
17332018
ENCODE data at the ENCODE portal
CA Sloan, ET Chan, JM Davidson, VS Malladi, JS Strattan, BC Hitz, ...
Nucleic acids research 44 (D1), D726-D732, 2016
5442016
New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
Y Luo, BC Hitz, I Gabdank, JA Hilton, MS Kagda, B Lam, Z Myers, P Sud, ...
Nucleic acids research 48 (D1), D882-D889, 2020
5052020
Recompleting the Caenorhabditis elegans genome
J Yoshimura, K Ichikawa, MJ Shoura, KL Artiles, I Gabdank, L Wahba, ...
Genome research 29 (6), 1009-1022, 2019
1202019
Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens
MJ Shoura, I Gabdank, L Hansen, J Merker, J Gotlib, SD Levene, AZ Fire
G3: Genes, Genomes, Genetics 7 (10), 3295-3303, 2017
1062017
Nucleosome DNA Bendability Matrix (C. elegans)
I Gabdank, D Barash, EN Trifonov
Journal of Biomolecular Structure and Dynamics 26 (4), 403-411, 2009
802009
Preferential translation of Hsp83 in Leishmania requires a thermosensitive polypyrimidine-rich element in the 3′ UTR and involves scanning of the 5′ UTR
M David, I Gabdank, M Ben-David, A Zilka, I Orr, D Barash, M Shapira
Rna 16 (2), 364-374, 2010
652010
Principles of metadata organization at the ENCODE data coordination center
EL Hong, CA Sloan, ET Chan, JM Davidson, VS Malladi, JS Strattan, ...
Database 2016, baw001, 2016
602016
Single-base resolution nucleosome mapping on DNA sequences
I Gabdank, D Barash, EN Trifonov
Journal of Biomolecular Structure and Dynamics 28 (1), 107-121, 2010
432010
FineStr: a web server for single-base-resolution nucleosome positioning
I Gabdank, D Barash, EN Trifonov
Bioinformatics 26 (6), 845-846, 2010
382010
Primordia Vita. Deconvolution from Modern Sequences.
EN Trifonov, I Gabdank, D Barash, Y Sobolevsky
Origins of Life and Evolution of Biospheres 36, 559-565, 2006
332006
The ENCODE uniform analysis pipelines
BC Hitz, JW Lee, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ...
Research Square, 2023
322023
Perspectives on ENCODE
F Abascal, R Acosta, NJ Addleman, J Adrian, V Afzal, B Aken, JA Akiyama
Nature 583 (7818), 693-699, 2020
252020
The ENCODE portal as an epigenomics resource
J Jou, I Gabdank, Y Luo, K Lin, P Sud, Z Myers, JA Hilton, MS Kagda, ...
Current protocols in bioinformatics 68 (1), e89, 2019
252019
In Silico Design of Small RNA Switches
A Avihoo, I Gabdank, M Shapira, D Barash
IEEE Transactions on Nanobioscience 6 (1), 4-11, 2007
232007
The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models
J Rozowsky, J Gao, B Borsari, YT Yang, T Galeev, G Gürsoy, CB Epstein, ...
Cell 186 (7), 1493-1511. e40, 2023
222023
A streamlined tethered chromosome conformation capture protocol
I Gabdank, S Ramakrishnan, AM Villeneuve, AZ Fire
BMC genomics 17, 1-13, 2016
192016
The RNAmute web server for the mutational analysis of RNA secondary structures
A Churkin, I Gabdank, D Barash
Nucleic acids research 39 (suppl_2), W92-W99, 2011
182011
SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata
BC Hitz, LD Rowe, NR Podduturi, DI Glick, UK Baymuradov, VS Malladi, ...
PloS one 12 (4), e0175310, 2017
172017
The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity
F Reese, B Williams, G Balderrama-Gutierrez, D Wyman, MH Çelik, ...
bioRxiv, 2023
142023
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