Anne Richelle
Anne Richelle
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Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0
L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ...
Nature protocols 14 (3), 639-702, 2019
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
A systematic evaluation of methods for tailoring genome-scale metabolic models
S Opdam, A Richelle, B Kellman, S Li, DC Zielinski, NE Lewis
Cell systems 4 (3), 318-329. e6, 2017
Increasing consensus of context-specific metabolic models by integrating data-inferred cell functions
A Richelle, AWT Chiang, CC Kuo, NE Lewis
PLoS computational biology 15 (4), e1006867, 2019
Assessing key decisions for transcriptomic data integration in biochemical networks
A Richelle, C Joshi, NE Lewis
PLoS computational biology 15 (7), e1007185, 2019
Memote: A community driven effort towards a standardized genome-scale metabolic model test suite
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
BioRxiv, 350991, 2018
Improvements in protein production in mammalian cells from targeted metabolic engineering
A Richelle, NE Lewis
Current opinion in systems biology 6, 1-6, 2017
Linear robust control of S. cerevisiae fed-batch cultures at different scales
L Dewasme, A Richelle, P Dehottay, P Georges, M Remy, P Bogaerts, ...
Biochemical engineering journal 53 (1), 26-37, 2010
When is an in silico representation a digital twin? A biopharmaceutical industry approach to the digital twin concept
RMC Portela, C Varsakelis, A Richelle, N Giannelos, J Pence, S Dessoy, ...
Digital Twins: Tools and Concepts for Smart Biomanufacturing, 35-55, 2021
Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multi-omics integration
BP Kellman, A Richelle, JY Yang, D Chapla, AWT Chiang, JA Najera, ...
Nature communications 13 (1), 2455, 2022
Model-based assessment of mammalian cell metabolic functionalities using omics data
A Richelle, BP Kellman, AT Wenzel, AWT Chiang, T Reagan, ...
Cell reports methods 1 (3), 2021
Modulating carbohydrate–protein interactions through glycoengineering of monoclonal antibodies to impact cancer physiology
AWT Chiang, S Li, PN Spahn, A Richelle, CC Kuo, M Samoudi, NE Lewis
Current opinion in structural biology 40, 104-111, 2016
StanDep: Capturing transcriptomic variability improves context-specific metabolic models
CJ Joshi, SM Schinn, A Richelle, I Shamie, EJ O’Rourke, NE Lewis
PLoS computational biology 16 (5), e1007764, 2020
Coordinate regulation of systemic and kidney tryptophan metabolism by the drug transporters OAT1 and OAT3
JC Granados, A Richelle, JM Gutierrez, P Zhang, X Zhang, V Bhatnagar, ...
Journal of Biological Chemistry 296, 2021
Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes
JD Tibocha-Bonilla, M Kumar, A Richelle, RD Godoy-Silva, K Zengler, ...
NPJ systems biology and applications 6 (1), 14, 2020
Systematic methodology for bioprocess model identification based on generalized kinetic functions
A Richelle, P Bogaerts
Biochemical engineering journal 100, 41-49, 2015
Macroscopic modelling of baker's yeast production in fed-batch cultures and its link with trehalose production
A Richelle, P Fickers, P Bogaerts
Computers & chemical engineering 61, 220-233, 2014
Towards a widespread adoption of metabolic modeling tools in biopharmaceutical industry: a process systems biology engineering perspective
A Richelle, B David, D Demaegd, M Dewerchin, R Kinet, A Morreale, ...
NPJ systems biology and applications 6 (1), 6, 2020
From MFA to FBA: Defining linear constraints accounting for overflow metabolism in a macroscopic FBA-based dynamical model of cell cultures in bioreactor
P Bogaerts, KM Gziri, A Richelle
Journal of Process Control 60, 34-47, 2017
A methodology for building a macroscopic FBA-based dynamical simulator of cell cultures through flux variability analysis
A Richelle, KM Gziri, P Bogaerts
Biochemical engineering journal 114, 50-64, 2016
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