| Comparative experiments on learning information extractors for proteins and their interactions R Bunescu, R Ge, RJ Kate, EM Marcotte, RJ Mooney, AK Ramani, ... Artificial intelligence in medicine 33 (2), 139-155, 2005 | 543 | 2005 |
| How complete are current yeast and human protein-interaction networks? GT Hart, AK Ramani, EM Marcotte Genome biology 7, 1-9, 2006 | 529 | 2006 |
| Protein interaction networks from yeast to human P Bork, LJ Jensen, C Von Mering, AK Ramani, I Lee, EM Marcotte Current opinion in structural biology 14 (3), 292-299, 2004 | 484 | 2004 |
| Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte Genome biology 6, 1-12, 2005 | 315 | 2005 |
| Alterations in ALK/ROS1/NTRK/MET drive a group of infantile hemispheric gliomas AS Guerreiro Stucklin, S Ryall, K Fukuoka, M Zapotocky, A Lassaletta, ... Nature Communications 10 (1), 4343, 2019 | 298 | 2019 |
| Global impact of RNA polymerase II elongation inhibition on alternative splicing regulation JY Ip, D Schmidt, Q Pan, AK Ramani, AG Fraser, DT Odom, BJ Blencowe Genome research 21 (3), 390-401, 2011 | 280 | 2011 |
| Expanding the boundaries of RNA sequencing as a diagnostic tool for rare Mendelian disease HD Gonorazky, S Naumenko, AK Ramani, V Nelakuditi, P Mashouri, ... The American Journal of Human Genetics 104 (3), 466-483, 2019 | 273 | 2019 |
| Exploiting the co-evolution of interacting proteins to discover interaction specificity AK Ramani, EM Marcotte Journal of molecular biology 327 (1), 273-284, 2003 | 260 | 2003 |
| Genome-wide analysis of alternative splicing in Caenorhabditis elegans AK Ramani, JA Calarco, Q Pan, S Mavandadi, Y Wang, AC Nelson, ... Genome research 21 (2), 342-348, 2011 | 195 | 2011 |
| Spatial genomic heterogeneity in diffuse intrinsic pontine and midline high-grade glioma: implications for diagnostic biopsy and targeted therapeutics LM Hoffman, M DeWire, S Ryall, P Buczkowicz, J Leach, L Miles, ... Acta neuropathologica communications 4, 1-8, 2016 | 160 | 2016 |
| High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans AK Ramani, AC Nelson, P Kapranov, I Bell, TR Gingeras, AG Fraser Genome Biology 10, 1-18, 2009 | 115 | 2009 |
| Prevalence and clinical features of inflammatory bowel diseases associated with monogenic variants, identified by whole-exome sequencing in 1000 children at a single center E Crowley, N Warner, J Pan, S Khalouei, A Elkadri, K Fiedler, J Foong, ... Gastroenterology 158 (8), 2208-2220, 2020 | 112 | 2020 |
| A map of human protein interactions derived from co‐expression of human mRNAs and their orthologs AK Ramani, Z Li, GT Hart, MW Carlson, DR Boutz, EM Marcotte Molecular systems biology 4 (1), 180, 2008 | 100 | 2008 |
| A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types AD Norris, S Gao, ML Norris, D Ray, AK Ramani, AG Fraser, Q Morris, ... Molecular cell 54 (6), 946-959, 2014 | 84 | 2014 |
| Integrating co-occurrence statistics with information extraction for robust retrieval of protein interactions from Medline R Bunescu, R Mooney, A Ramani, E Marcotte Proceedings of the hlt-naacl bionlp workshop on linking natural language and …, 2006 | 82 | 2006 |
| Comparative RNAi Screens in C. elegans and C. briggsae Reveal the Impact of Developmental System Drift on Gene Function AJ Verster, AK Ramani, SJ McKay, AG Fraser PLoS genetics 10 (2), e1004077, 2014 | 74 | 2014 |
| The majority of animal genes are required for wild-type fitness AK Ramani, T Chuluunbaatar, AJ Verster, H Na, V Vu, N Pelte, ... Cell 148 (4), 792-802, 2012 | 71 | 2012 |
| Tamoxifen therapy in a murine model of myotubular myopathy N Maani, N Sabha, K Rezai, A Ramani, L Groom, N Eltayeb, ... Nature Communications 9 (1), 4849, 2018 | 52 | 2018 |
| Beyond the exome: what’s next in diagnostic testing for Mendelian conditions MH Wojcik, CM Reuter, S Marwaha, M Mahmoud, MH Duyzend, ... The American Journal of Human Genetics 110 (8), 1229-1248, 2023 | 49 | 2023 |
| The clinical utility of integrative genomics in childhood cancer extends beyond targetable mutations A Villani, S Davidson, N Kanwar, WW Lo, Y Li, S Cohen-Gogo, F Fuligni, ... Nature Cancer 4 (2), 203-221, 2023 | 49 | 2023 |
