|flowCore: a Bioconductor package for high throughput flow cytometry|
F Hahne, N LeMeur, RR Brinkman, B Ellis, P Haaland, D Sarkar, ...
BMC bioinformatics 10 (1), 1-8, 2009
|Implementation of nationwide real-time whole-genome sequencing to enhance listeriosis outbreak detection and investigation|
BR Jackson, C Tarr, E Strain, KA Jackson, A Conrad, H Carleton, LS Katz, ...
Reviews of Infectious Diseases 63 (3), 380-386, 2016
|Practical value of food pathogen traceability through building a whole-genome sequencing network and database|
MW Allard, E Strain, D Melka, K Bunning, SM Musser, EW Brown, ...
Journal of clinical microbiology 54 (8), 1975-1983, 2016
|Identification of a salmonellosis outbreak by means of molecular sequencing|
EK Lienau, E Strain, C Wang, J Zheng, AR Ottesen, CE Keys, ...
New England Journal of Medicine 364 (10), 981-982, 2011
|Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato)|
AR Ottesen, AG Peña, JR White, JB Pettengill, C Li, S Allard, S Rideout, ...
BMC microbiology 13 (1), 1-12, 2013
|On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01. 0004|
MW Allard, Y Luo, E Strain, J Pettengill, R Timme, C Wang, C Li, CE Keys, ...
PloS one 8 (1), e55254, 2013
|CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data|
S Davis, JB Pettengill, Y Luo, J Payne, A Shpuntoff, H Rand, E Strain
PeerJ Computer Science 1, e20, 2015
|High resolution clustering of Salmonella enterica serovar Montevideo strains using a next-generation sequencing approach|
MW Allard, Y Luo, E Strain, C Li, CE Keys, I Son, R Stones, SM Musser, ...
BMC genomics 13 (1), 1-19, 2012
|Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis|
HC Den Bakker, MW Allard, D Bopp, EW Brown, J Fontana, Z Iqbal, ...
Emerging infectious diseases 20 (8), 1306, 2014
|Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters|
RE Timme, JB Pettengill, MW Allard, E Strain, R Barrangou, C Wehnes, ...
Genome biology and evolution 5 (11), 2109-2123, 2013
|Efficient isolation and identification of Bacillus cereus group|
SM Tallent, KM Kotewicz, EA Strain, RW Bennett
Journal of AOAC International 95 (2), 446-451, 2012
|Outbreak of Salmonella Newport infections linked to cucumbers—United States, 2014|
KM Angelo, A Chu, M Anand, TA Nguyen, L Bottichio, M Wise, I Williams, ...
MMWR. Morbidity and mortality weekly report 64 (6), 144, 2015
|Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States|
M Hoffmann, Y Luo, SR Monday, N Gonzalez-Escalona, AR Ottesen, ...
The Journal of Infectious Diseases 213 (4), 502-508, 2016
|Infectious dose of Listeria monocytogenes in outbreak linked to ice cream, United States, 2015|
R Pouillot, KC Klontz, Y Chen, LS Burall, D Macarisin, M Doyle, KM Bally, ...
Emerging infectious diseases 22 (12), 2113, 2016
|Core genome multilocus sequence typing for identification of globally distributed clonal groups and differentiation of outbreak strains of Listeria monocytogenes|
Y Chen, N Gonzalez-Escalona, TS Hammack, MW Allard, EA Strain, ...
Applied and environmental microbiology 82 (20), 6258-6272, 2016
|Genomic analysis of closely related astroviruses|
E Strain, LA Kelley, S Schultz-Cherry, SV Muse, MD Koci
Journal of Virology 82 (10), 5099-5103, 2008
|The construction of cultural values and beliefs in Chinese language textbooks: A critical discourse analysis|
Discourse: Studies in the cultural politics of education 26 (1), 15-30, 2005
|Listeriosis associated with stone fruit—United States, 2014|
BR Jackson, M Salter, C Tarr, A Conrad, E Harvey, L Steinbock, A Saupe, ...
MMWR. Morbidity and mortality weekly report 64 (10), 282, 2015
|Phylogenetics and differentiation of Salmonella Newport lineages by whole genome sequencing|
G Cao, J Meng, E Strain, R Stones, J Pettengill, S Zhao, P McDermott, ...
PloS one 8 (2), e55687, 2013
|Interpreting whole-genome sequence analyses of foodborne bacteria for regulatory applications and outbreak investigations|
AW Pightling, JB Pettengill, Y Luo, JD Baugher, H Rand, E Strain
Frontiers in microbiology 9, 1482, 2018