| Global landscape of HIV–human protein complexes S Jaeger, P Cimermancic, N Gulbahce, JR Johnson, KE McGovern, ... Nature 481 (7381), 365-370, 2012 | 781 | 2012 |
| Host cell factors in HIV replication: meta-analysis of genome-wide studies FD Bushman, N Malani, J Fernandes, I D'Orso, G Cagney, TL Diamond, ... PLoS pathogens 5 (5), e1000437, 2009 | 525 | 2009 |
| The UCSC genome browser database: 2021 update J Navarro Gonzalez, AS Zweig, ML Speir, D Schmelter, KR Rosenbloom, ... Nucleic acids research 49 (D1), D1046-D1057, 2021 | 398 | 2021 |
| The HIV-1 Rev response element: an RNA scaffold that directs the cooperative assembly of a homo-oligomeric ribonucleoprotein complex J Fernandes, B Jayaraman, A Frankel RNA biology 9 (1), 6-11, 2012 | 122 | 2012 |
| Sequence diversity analyses of an improved rhesus macaque genome enhance its biomedical utility WC Warren, RA Harris, M Haukness, IT Fiddes, SC Murali, J Fernandes, ... Science 370 (6523), eabc6617, 2020 | 109 | 2020 |
| Stability of SARS-CoV-2 phylogenies Y Turakhia, N De Maio, B Thornlow, L Gozashti, R Lanfear, CR Walker, ... PLoS genetics 16 (11), e1009175, 2020 | 96 | 2020 |
| The UCSC SARS-CoV-2 genome browser JD Fernandes, AS Hinrichs, H Clawson, JN Gonzalez, BT Lee, LR Nassar, ... Nature Genetics 52 (10), 991-998, 2020 | 93 | 2020 |
| Purification and characterization of HIV–human protein complexes S Jäger, N Gulbahce, P Cimermancic, J Kane, N He, S Chou, I D’Orso, ... Methods 53 (1), 13-19, 2011 | 76 | 2011 |
| Functional segregation of overlapping genes in HIV JD Fernandes, TB Faust, NB Strauli, C Smith, DC Crosby, RL Nakamura, ... Cell 167 (7), 1762-1773. e12, 2016 | 61 | 2016 |
| A survey-based analysis of the academic job market JD Fernandes, S Sarabipour, CT Smith, NM Niemi, NM Jadavji, AJ Kozik, ... Elife 9, e54097, 2020 | 57* | 2020 |
| A high-quality bonobo genome refines the analysis of hominid evolution Y Mao, CR Catacchio, LDW Hillier, D Porubsky, R Li, A Sulovari, ... Nature 594 (7861), 77-81, 2021 | 53 | 2021 |
| Reduction of right medial pulvinar volume and neuron number in schizophrenia W Byne, J Fernandes, V Haroutunian, D Huacon, S Kidkardnee, J Kim, ... Schizophrenia research 90 (1-3), 71-75, 2007 | 46 | 2007 |
| The UCSC repeat browser allows discovery and visualization of evolutionary conflict across repeat families JD Fernandes, A Zamudio-Hurtado, H Clawson, WJ Kent, D Haussler, ... Mobile DNA 11, 1-12, 2020 | 31 | 2020 |
| A structurally plastic ribonucleoprotein complex mediates post‐transcriptional gene regulation in HIV‐1 JD Fernandes, DS Booth, AD Frankel Wiley Interdisciplinary Reviews: RNA 7 (4), 470-486, 2016 | 28 | 2016 |
| Oligomeric viral proteins: small in size, large in presence B Jayaraman, AM Smith, JD Fernandes, AD Frankel Critical reviews in biochemistry and molecular biology 51 (5), 379-394, 2016 | 26 | 2016 |
| Highly mutable linker regions regulate HIV-1 rev function and stability B Jayaraman, JD Fernandes, S Yang, C Smith, AD Frankel Scientific reports 9 (1), 5139, 2019 | 16 | 2019 |
| Co-option of the lineage-specific LAVA retrotransposon in the gibbon genome M Okhovat, KA Nevonen, BA Davis, P Michener, S Ward, M Milhaven, ... Proceedings of the National Academy of Sciences 117 (32), 19328-19338, 2020 | 15 | 2020 |
| KRAB zinc finger proteins coordinate across evolutionary time scales to battle retroelements JD Fernandes, M Haeussler, J Armstrong, K Tigyi, J Gu, N Filippi, J Pierce, ... bioRxiv, 429563, 2018 | 8 | 2018 |
| Functional and structural segregation of overlapping helices in HIV-1 M Safari, B Jayaraman, S Yang, C Smith, JD Fernandes, AD Frankel Elife 11, e72482, 2022 | 7 | 2022 |
| Mutant KRAS regulates transposable element RNA and innate immunity via KRAB zinc-finger genes RE Reggiardo, SV Maroli, H Halasz, M Ozen, E Hrabeta-Robinson, ... Cell reports 40 (3), 2022 | 6 | 2022 |
David HausslerScientific Director, UC Santa Cruz Genomics Institute, University of California, Santa CruzDirección de correo verificada de soe.ucsc.edu
