S. Chakra Chennubhotla
S. Chakra Chennubhotla
Associate Professor of Computational and Systems Biology, University of Pittsburgh
Verified email at
Cited by
Cited by
Normal mode analysis: theory and applications to biological and chemical systems
Q Cui, I Bahar
CRC press, 2005
Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation
I Bahar, C Chennubhotla, D Tobi
Current opinion in structural biology 17 (6), 633-640, 2007
Signal propagation in proteins and relation to equilibrium fluctuations
C Chennubhotla, I Bahar
PLoS computational biology 3 (9), e172, 2007
Evol and ProDy for bridging protein sequence evolution and structural dynamics
A Bakan, A Dutta, W Mao, Y Liu, C Chennubhotla, TR Lezon, I Bahar
Bioinformatics 30 (18), 2681-2683, 2014
Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies
C Chennubhotla, AJ Rader, LW Yang, I Bahar
Physical biology 2 (4), S173, 2005
Markov propagation of allosteric effects in biomolecular systems: application to GroEL–GroES
C Chennubhotla, I Bahar
Molecular systems biology 2 (1), 36, 2006
Categorical dimensions of human odor descriptor space revealed by non-negative matrix factorization
JB Castro, A Ramanathan, CS Chennubhotla
PloS one 8 (9), e73289, 2013
Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions
LW Yang, E Eyal, C Chennubhotla, JG Jee, AM Gronenborn, I Bahar
Structure 15 (6), 741-749, 2007
Report on computational assessment of tumor infiltrating lymphocytes from the International Immuno-Oncology Biomarker Working Group
M Amgad, ES Stovgaard, E Balslev, J Thagaard, W Chen, S Dudgeon, ...
NPJ breast cancer 6 (1), 16, 2020
Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL
C Chennubhotla, Z Yang, I Bahar
Molecular BioSystems 4 (4), 287-292, 2008
Protein conformational populations and functionally relevant substates
A Ramanathan, A Savol, V Burger, CS Chennubhotla, PK Agarwal
Accounts of chemical research 47 (1), 149-156, 2014
Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models
E Eyal, C Chennubhotla, LW Yang, I Bahar
Bioinformatics 23 (13), i175-i184, 2007
High-throughput virtual screening and validation of a SARS-CoV-2 main protease noncovalent inhibitor
A Clyde, S Galanie, DW Kneller, H Ma, Y Babuji, B Blaiszik, A Brace, ...
Journal of chemical information and modeling 62 (1), 116-128, 2021
Discovering conformational sub-states relevant to protein function
A Ramanathan, A Savol, P Agarwal, CS Chennubhotla
Biophysical Journal 100 (3), 172a, 2011
Biologically relevant heterogeneity: metrics and practical insights
A Gough, AM Stern, J Maier, T Lezon, TY Shun, C Chennubhotla, ...
Slas Discovery: Advancing Life Sciences R&D 22 (3), 213-237, 2017
Explainable AI (xAI) for anatomic pathology
AB Tosun, F Pullara, MJ Becich, DL Taylor, JL Fine, SC Chennubhotla
Advances in Anatomic Pathology 27 (4), 241-250, 2020
Sparse PCA. Extracting multi-scale structure from data
C Chennubhotla, A Jepson
Proceedings Eighth IEEE International Conference on Computer Vision. ICCV …, 2001
The Gaussian network model: Theory and applications
AJ Rader, C Chennubhotla, LW Yang, I Bahar
Normal mode analysis, 65-88, 2005
# COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol
A Dommer, L Casalino, F Kearns, M Rosenfeld, N Wauer, SH Ahn, ...
The international journal of high performance computing applications 37 (1 …, 2023
Spectral Embedding and Min Cut for Image Segmentation.
FJ Estrada, AD Jepson, C Chennubhotla
Bmvc, 1-10, 2004
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