| The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes F Meyer, D Paarmann, M D'Souza, R Olson, EM Glass, M Kubal, ... BMC bioinformatics 9, 1-8, 2008 | 4046 | 2008 |
| The use of gene clusters to infer functional coupling R Overbeek, M Fonstein, M D’souza, GD Pusch, N Maltsev Proceedings of the National Academy of Sciences 96 (6), 2896-2901, 1999 | 1624 | 1999 |
| Genome sequence of Bacillus cereus and comparative analysis with Bacillus anthracis N Ivanova, A Sorokin, I Anderson, N Galleron, B Candelon, V Kapatral, ... Nature 423 (6935), 87-91, 2003 | 989 | 2003 |
| Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 SY Gerdes, MD Scholle, JW Campbell, G Balazsi, E Ravasz, ... Journal of bacteriology 185 (19), 5673-5684, 2003 | 946 | 2003 |
| The genome sequence of the facultative intracellular pathogen Brucella melitensis VG DelVecchio, V Kapatral, RJ Redkar, G Patra, C Mujer, T Los, ... Proceedings of the National Academy of Sciences 99 (1), 443-448, 2002 | 740 | 2002 |
| WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction R Overbeek, N Larsen, GD Pusch, M D’Souza, ES Jr, N Kyrpides, ... Nucleic acids research 28 (1), 123-125, 2000 | 482 | 2000 |
| Genome Sequence and Analysis of the Oral Bacterium Fusobacterium nucleatum Strain ATCC 25586 V Kapatral, I Anderson, N Ivanova, G Reznik, T Los, A Lykidis, ... Journal of bacteriology 184 (7), 2005-2018, 2002 | 440 | 2002 |
| Searching for patterns in genomic data M Dsouza, N Larsen, R Overbeek Trends in Genetics 13 (12), 497–498, 1997 | 365 | 1997 |
| From genetic footprinting to antimicrobial drug targets: examples in cofactor biosynthetic pathways SY Gerdes, MD Scholle, M D'Souza, A Bernal, MV Baev, M Farrell, ... Journal of bacteriology 184 (16), 4555-4572, 2002 | 340 | 2002 |
| The ERGO TM genome analysis and discovery system R Overbeek, N Larsen, T Walunas, M D'Souza, G Pusch, E Selkov Jr, ... Nucleic acids research 31 (1), 164-171, 2003 | 288 | 2003 |
| Use of contiguity on the chromosome to predict functional coupling R Overbeek, M Fonstein, M D'Souza, GD Pusch, N Maltsev In Silico Biology 1 (2), 93-108, 1999 | 210 | 1999 |
| Whole-genome comparative analysis of three phytopathogenic Xylella fastidiosa strains A Bhattacharyya, S Stilwagen, N Ivanova, M D'Souza, A Bernal, A Lykidis, ... Proceedings of the National Academy of Sciences 99 (19), 12403-12408, 2002 | 149 | 2002 |
| Skyport-container-based execution environment management for multi-cloud scientific workflows W Gerlach, W Tang, K Keegan, T Harrison, A Wilke, J Bischof, M D'Souza, ... 2014 5th International Workshop on Data-Intensive Computing in the Clouds, 25-32, 2014 | 132 | 2014 |
| PatSearch: a pattern matcher software that finds functional elements in nucleotide and protein sequences and assesses their statistical significance G Pesole, S Liuni, M D’Souza Bioinformatics 16 (5), 439-450, 2000 | 107 | 2000 |
| Draft sequencing and comparative genomics of Xylella fastidiosa strains reveal novel biological insights A Bhattacharyya, S Stilwagen, G Reznik, H Feil, WS Feil, I Anderson, ... Genome research 12 (10), 1556-1563, 2002 | 105 | 2002 |
| Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis I Anderson, A Sorokin, V Kapatral, G Reznik, A Bhattacharya, ... FEMS Microbiology Letters 250 (2), 175-184, 2005 | 102 | 2005 |
| A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE KP Keegan, WL Trimble, J Wilkening, A Wilke, T Harrison, M D'Souza, ... PLoS computational biology 8 (6), e1002541, 2012 | 97 | 2012 |
| Genome analysis of F. nucleatum sub spp vincentii and its comparison with the genome of F. nucleatum ATCC 25586 V Kapatral, N Ivanova, I Anderson, G Reznik, A Bhattacharyya, ... Genome research 13 (6a), 1180-1189, 2003 | 93 | 2003 |
| PUMA2—grid-based high-throughput analysis of genomes and metabolic pathways N Maltsev, E Glass, D Sulakhe, A Rodriguez, MH Syed, T Bompada, ... Nucleic acids research 34 (suppl_1), D369-D372, 2006 | 88 | 2006 |
| A RESTful API for accessing microbial community data for MG-RAST A Wilke, J Bischof, T Harrison, T Brettin, M D'Souza, W Gerlach, ... PLoS Computational Biology 11 (1), e1004008, 2015 | 86 | 2015 |
Elizabeth M. GlassArgonne National LaboratoryVerified email at mcs.anl.gov
