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Erick Armingol
Erick Armingol
PhD in Bioinformatics and Systems Biology, University of California, San Diego
Verified email at eng.ucsd.edu - Homepage
Title
Cited by
Cited by
Year
Deciphering cell–cell interactions and communication from gene expression
E Armingol, A Officer, O Harismendy, NE Lewis
Nature Reviews Genetics 22 (2), 71–88, 2021
7202021
Context-aware deconvolution of cell–cell communication with Tensor-cell2cell
E Armingol, HM Baghdassarian, C Martino, A Perez-Lopez, C Aamodt, ...
Nature Communications 13 (1), 1-15, 2022
412022
Bacterial modification of the host glycosaminoglycan heparan sulfate modulates SARS-CoV-2 infectivity
C Martino, BP Kellman, DR Sandoval, TM Clausen, CA Marotz, SJ Song, ...
bioRxiv, 2020
362020
Inferring a spatial code of cell-cell interactions across a whole animal body
E Armingol, A Ghaddar, CJ Joshi, H Baghdassarian, I Shamie, J Chan, ...
PLOS Computational Biology 18 (11), e1010715, 2022
292022
Whole-body gene expression atlas of an adult metazoan
A Ghaddar, E Armingol, C Huynh, L Gevirtzman, NE Lewis, R Waterston, ...
Science Advances 9 (25), eadg0506, 2023
172023
Understanding the impact of the cofactor swapping of isocitrate dehydrogenase over the growth phenotype of Escherichia coli on acetate by using constraint-based …
E Armingol, E Tobar, R Cabrera
PloS one 13 (4), e0196182, 2018
152018
The diversification of methods for studying cell–cell interactions and communication
E Armingol, HM Baghdassarian, NE Lewis
Nature Reviews Genetics, 1-20, 2024
62024
Combining LIANA and Tensor-cell2cell to decipher cell-cell communication across multiple samples
HM Baghdassarian, D Dimitrov, E Armingol, J Saez-Rodriguez, NE Lewis
Cell Reports Methods 4 (4), 100758, 2024
52024
An improved algorithm for flux variability analysis
D Kenefake, E Armingol, NE Lewis, EN Pistikopoulos
BMC bioinformatics 23 (1), 1-14, 2022
52022
Unraveling the coordinated dynamics of protein-and metabolite-mediated cell-cell communication
E Armingol, RO Larsen, M Cequeira, H Baghdassarian, NE Lewis
bioRxiv, 2022
42022
Protein structure, a genetic encoding for glycosylation
B Kellman, D Sandoval, O Zaytseva, K Brock, S Baboo, D Nachmanson, ...
bioRxiv, 2024.05. 15.594261, 2024
2024
Decoding glycosylation potential from protein structure across human glycoproteins with a multi-view recurrent neural network
B Kellman, J Mariethoz, Y Zhang, S Shaul, M Jeffris, D Sandoval, M Jeffris, ...
bioRxiv, 2024.05. 15.594334, 2024
2024
Deciphering Patterns of Cell–Cell Interactions and Communication in Multicellular Organizations
EA Armingol Gonzalez
UC San Diego, 2023
2023
Análisis de balance de flujos del crecimiento en acetato de Escherichia Coli: efecto del cambio de especificidad por el cofactor de la Isocitrato deshidrogenasa
EA Armingol Gonzalez
Universisdad de Chile, 2015
2015
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Articles 1–14