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Christopher Henry
Christopher Henry
Computational Biologist, Argonne National Laboratory
Verified email at mcs.anl.gov
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Year
A genome‐scale metabolic reconstruction for Escherichia coli K‐12 MG1655 that accounts for 1260 ORFs and thermodynamic information
AM Feist, CS Henry, JL Reed, M Krummenacker, AR Joyce, PD Karp, ...
Molecular systems biology 3 (1), 121, 2007
17452007
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
15352017
High-throughput generation, optimization and analysis of genome-scale metabolic models
CS Henry, M DeJongh, AA Best, PM Frybarger, B Linsay, RL Stevens
Nature biotechnology 28 (9), 977-982, 2010
11922010
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
11902018
Thermodynamics-based metabolic flux analysis
CS Henry, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 92 (5), 1792-1805, 2007
7492007
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
6052021
Competitive and cooperative metabolic interactions in bacterial communities
S Freilich, R Zarecki, O Eilam, ES Segal, CS Henry, M Kupiec, U Gophna, ...
Nature communications 2 (1), 589, 2011
5362011
Group contribution method for thermodynamic analysis of complex metabolic networks
MD Jankowski, CS Henry, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 95 (3), 1487-1499, 2008
4912008
Exploring the diversity of complex metabolic networks
V Hatzimanikatis, C Li, JA Ionita, CS Henry, MD Jankowski, LJ Broadbelt
Bioinformatics 21 (8), 1603-1609, 2005
4292005
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
3582020
Genome-scale thermodynamic analysis of Escherichia coli metabolism
CS Henry, MD Jankowski, LJ Broadbelt, V Hatzimanikatis
Biophysical journal 90 (4), 1453-1461, 2006
2822006
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics
JG Jeffryes, RL Colastani, M Elbadawi-Sidhu, T Kind, TD Niehaus, ...
Journal of cheminformatics 7, 1-8, 2015
2272015
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models
RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ...
PloS one 7 (10), e48053, 2012
2242012
iBsu1103: a new genome-scale metabolic model of Bacillus subtilis based on SEED annotations
CS Henry, JF Zinner, MP Cohoon, RL Stevens
Genome Biol 10 (6), R69, 2009
2062009
Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3‐hydroxypropanoate
CS Henry, LJ Broadbelt, V Hatzimanikatis
Biotechnology and bioengineering 106 (3), 462-473, 2010
1932010
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes
SMD Seaver, F Liu, Q Zhang, J Jeffryes, JP Faria, JN Edirisinghe, ...
Nucleic acids research 49 (D1), D575-D588, 2021
1742021
Automated genome annotation and metabolic model reconstruction in the SEED and Model SEED
S Devoid, R Overbeek, M DeJongh, V Vonstein, AA Best, C Henry
Systems metabolic engineering: methods and protocols, 17-45, 2013
1692013
Metabolic reconstruction and modeling microbial electrosynthesis
CW Marshall, DE Ross, KM Handley, PB Weisenhorn, JN Edirisinghe, ...
Scientific reports 7 (1), 8391, 2017
1222017
Microbial community metabolic modeling: a community data‐driven network reconstruction
CS Henry, HC Bernstein, P Weisenhorn, RC Taylor, JY Lee, J Zucker, ...
Journal of cellular physiology 231 (11), 2339-2345, 2016
1152016
Building the repertoire of dispensable chromosome regions in Bacillus subtilis entails major refinement of cognate large-scale metabolic model
K Tanaka, CS Henry, JF Zinner, E Jolivet, MP Cohoon, F Xia, V Bidnenko, ...
Nucleic acids research 41 (1), 687-699, 2013
1092013
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Articles 1–20