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Junhao Li
Junhao Li
Assistant Project Scientist, Cognitive Science, University of California, San Diego
Verified email at ucsd.edu
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Cited by
Cited by
Year
starBase v2. 0: decoding miRNA-ceRNA, miRNA-ncRNA and protein–RNA interaction networks from large-scale CLIP-Seq data
JH Li, S Liu, H Zhou, LH Qu, JH Yang
Nucleic acids research 42 (D1), D92-D97, 2014
47892014
starBase: a database for exploring microRNA–mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
JH Yang, JH Li, P Shao, H Zhou, YQ Chen, LH Qu
Nucleic acids research 39 (suppl 1), D202-D209, 2011
8472011
Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex
C Luo, CL Keown, L Kurihara, J Zhou, Y He, J Li, R Castanon, J Lucero, ...
Science 357 (6351), 600-604, 2017
5152017
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
JH Yang, JH Li, S Jiang, H Zhou, LH Qu
Nucleic acids research 41 (D1), D177-D187, 2013
3612013
deepBase v2. 0: identification, expression, evolution and function of small RNAs, LncRNAs and circular RNAs from deep-sequencing data
LL Zheng, JH Li, J Wu, WJ Sun, S Liu, ZL Wang, H Zhou, JH Yang, LH Qu
Nucleic acids research 44 (D1), D196-D202, 2016
2142016
Single-cell sequencing of brain cell transcriptomes and epigenomes
EJ Armand, J Li, F Xie, C Luo, EA Mukamel
Neuron 109 (1), 11-26, 2021
1992021
RMBase: a resource for decoding the landscape of RNA modifications from high-throughput sequencing data
WJ Sun, JH Li, S Liu, J Wu, H Zhou, LH Qu, JH Yang
Nucleic acids research 44 (D1), D259-D265, 2016
1952016
β-Catenin/LEF1 transactivates the microRNA-371-373 cluster that modulates the Wnt/β-catenin-signaling pathway
AD Zhou, LT Diao, H Xu, ZD Xiao, JH Li, H Zhou, LH Qu
Oncogene 31 (24), 2968-2978, 2012
1762012
Environmental enrichment increases transcriptional and epigenetic differentiation between mouse dorsal and ventral dentate gyrus
TY Zhang, CL Keown, X Wen, J Li, DA Vousden, C Anacker, ...
Nature communications 9 (1), 298, 2018
1612018
tRF2Cancer: A web server to detect tRNA-derived small RNA fragments (tRFs) and their expression in multiple cancers
LL Zheng, WL Xu, S Liu, WJ Sun, JH Li, J Wu, JH Yang, LH Qu
Nucleic acids research 44 (W1), W185-W193, 2016
1332016
A unique role for DNA (hydroxy) methylation in epigenetic regulation of human inhibitory neurons
A Kozlenkov, J Li, P Apontes, YL Hurd, WM Byne, EV Koonin, M Wegner, ...
Science Advances 4 (9), eaau6190, 2018
1112018
Inhibition of the JNK/MAPK signaling pathway by myogenesis-associated miRNAs is required for skeletal muscle development
SJ Xie, JH Li, HF Chen, YY Tan, SR Liu, Y Zhang, H Xu, JH Yang, S Liu, ...
Cell Death & Differentiation, 1, 2018
1062018
Discovery of protein–lncRNA interactions by integrating large-scale CLIP-seq and RNA-seq datasets
JH Li, S Liu, LL Zheng, J Wu, WJ Sun, ZL Wang, H Zhou, LH Qu, JH Yang
Frontiers in bioengineering and biotechnology 2, 88, 2015
862015
A distinct set of long non-coding RNAs in childhood MLL-rearranged acute lymphoblastic leukemia: biology and epigenetic target
K Fang, BW Han, ZH Chen, KY Lin, CW Zeng, XJ Li, JH Li, XQ Luo, ...
Human molecular genetics 23 (12), 3278-3288, 2014
592014
MtiBase: a database for decoding microRNA target sites located within CDS and 5′ UTR regions from CLIP-Seq and expression profile datasets
ZW Guo, C Xie, JR Yang, JH Li, JH Yang, L Zheng
Database 2015, bav102, 2015
372015
Cellular and genetic drivers of RNA editing variation in the human brain
WH Cuddleston, J Li, X Fan, A Kozenkov, M Lalli, S Khalique, S Dracheva, ...
Nature Communications 13 (1), 2997, 2022
342022
StarScan: a web server for scanning small RNA targets from degradome sequencing data
S Liu, JH Li, J Wu, KR Zhou, H Zhou, JH Yang, LH Qu
Nucleic acids research 43 (W1), W480-W486, 2015
302015
Divergent single cell transcriptome and epigenome alterations in ALS and FTD patients with C9orf72 mutation
J Li, MK Jaiswal, JF Chien, A Kozlenkov, J Jung, P Zhou, M Gardashli, ...
Nature Communications 14 (1), 5714, 2023
222023
Evolution of regulatory signatures in primate cortical neurons at cell-type resolution
A Kozlenkov, MW Vermunt, P Apontes, J Li, K Hao, CC Sherwood, PR Hof, ...
Proceedings of the National Academy of Sciences 117 (45), 28422-28432, 2020
222020
Integrative analysis reveals clinical phenotypes and oncogenic potentials of long non-coding RNAs across 15 cancer types
ZL Wang, B Li, SR Piccolo, XQ Zhang, JH Li, H Zhou, JH Yang, LH Qu
Oncotarget 7 (23), 35044, 2016
222016
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