Sofie Van Landeghem
Sofie Van Landeghem
Freelance NLP & ML expert
Verified email at - Homepage
Cited by
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What is stress? Dose-response effects in commonly used in vitro stress assays
H Claeys, S Van Landeghem, M Dubois, K Maleux, D Inzé
Plant physiology 165 (2), 519-527, 2014
Large-scale event extraction from literature with multi-level gene normalization
S Van Landeghem, J Björne, CH Wei, K Hakala, S Pyysalo, S Ananiadou, ...
PloS one 8 (4), e55814, 2013
pico‐PLAZA, a genome database of microbial photosynthetic eukaryotes
K Vandepoele, M Van Bel, G Richard, S Van Landeghem, B Verhelst, ...
Environmental microbiology 15 (8), 2147-2153, 2013
Extracting protein-protein interactions from text using rich feature vectors and feature selection
S Van Landeghem, Y Saeys, B De Baets, Y Van de Peer
Proceedings of the Third International Symposium on Semantic Mining in …, 2008
EVEX in ST’13: Application of a large-scale text mining resource to event extraction and network construction
K Hakala, S Van Landeghem, T Salakoski, Y Van de Peer, F Ginter
Proceedings of the BioNLP shared task 2013 workshop, 26-34, 2013
Discriminative and informative features for biomolecular text mining with ensemble feature selection
S Van Landeghem, T Abeel, Y Saeys, Y Van de Peer
Bioinformatics 26 (18), i554-i560, 2010
EVEX: a PubMed-scale resource for homology-based generalization of text mining predictions
S Van Landeghem, F Ginter, Y Van de Peer, T Salakoski
Proceedings of BioNLP 2011 workshop, 28-37, 2011
Exploring biomolecular literature with EVEX: connecting genes through events, homology, and indirect associations
S Van Landeghem, K Hakala, S Rönnqvist, T Salakoski, Y Van de Peer, ...
Advances in bioinformatics 2012 (1), 582765, 2012
Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks
SV Landeghem, TV Parys, M Dubois, D Inzé, YV de Peer
BMC bioinformatics 17, 1-12, 2016
The Potential of Text Mining in Data Integration and Network Biology for Plant Research: A Case Study on Arabidopsis
S Van Landeghem, S De Bodt, ZJ Drebert, D Inzé, Y Van de Peer
The Plant Cell 25 (3), 794-807, 2013
Analyzing text in search of bio-molecular events: a high-precision machine learning framework
S Van Landeghem, Y Saeys, B De Baets, Y Van de Peer
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task …, 2009
Cell line name recognition in support of the identification of synthetic lethality in cancer from text
S Kaewphan, S Van Landeghem, T Ohta, Y Van de Peer, F Ginter, ...
Bioinformatics 32 (2), 276-282, 2016
Semantically linking molecular entities in literature through entity relationships
S Van Landeghem, J Björne, T Abeel, B De Baets, T Salakoski, ...
BMC bioinformatics 13, 1-9, 2012
U-Compare bio-event meta-service: compatible BioNLP event extraction services
Y Kano, J Björne, F Ginter, T Salakoski, E Buyko, U Hahn, KB Cohen, ...
BMC bioinformatics 12, 1-9, 2011
PubMed-scale event extraction for post-translational modifications, epigenetics and protein structural relations
J Björne, S Van Landeghem, S Pyysalo, T Ohta, F Ginter, Y Van de Peer, ...
BioNLP: Proceedings of the 2012 Workshop on Biomedical Natural Language …, 2012
The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining
D Szakonyi, S Van Landeghem, K Baerenfaller, L Baeyens, J Blomme, ...
Current Plant Biology 2, 1-11, 2015
Integrating large-scale text mining and co-expression networks: Targeting NADP (H) metabolism in E. coli with event extraction
S Kaewphan, S Kreula, S Van Landeghem, Y Van de Peer, P Jones, ...
Proceedings of the Third Workshop on Building and Evaluating Resources for …, 2012
Integration of static relations to enhance event extraction from text
S Van Landeghem, S Pyysalo, T Ohta, Y Van de Peer
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing …, 2010
High‐precision bio‐molecular event extraction from text using parallel binary classifiers
S Van Landeghem, B De Baets, Y Van de Peer, Y Saeys
Computational Intelligence 27 (4), 645-664, 2011
Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis
K Hakala, S Van Landeghem, T Salakoski, Y Van de Peer, F Ginter
BMC bioinformatics 16, 1-12, 2015
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