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Eric T. Dawson
Eric T. Dawson
Verified email at nvidia.com - Homepage
Title
Cited by
Cited by
Year
Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
6472018
ReactomeFIViz: the Reactome FI Cytoscape app for pathway and network-based data analysis
Guanming Wu, Eric Dawson, Adrian Duong, Robin Haw, Lincoln Stein
F1000Research 3, 2014
2582014
Genotyping structural variants in pangenome graphs using the vg toolkit
G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ...
Genome biology 21, 1-17, 2020
2332020
A spectrum of free software tools for processing the VCF variant call format: vcflib, bio-vcf, cyvcf2, hts-nim and slivar
E Garrison, ZN Kronenberg, ET Dawson, BS Pedersen, P Prins
PLoS Computational Biology 18 (5), e1009123, 2022
1842022
Radiation-related genomic profile of papillary thyroid carcinoma after the Chernobyl accident
LM Morton, DM Karyadi, C Stewart, TI Bogdanova, ET Dawson, ...
Science 372 (6543), eabg2538, 2021
1392021
Accelerating Minimap2 for accurate long read alignment on GPUs
H Sadasivan, M Maric, E Dawson, V Iyer, J Israeli, S Narayanasamy
Journal of biotechnology and biomedicine 6 (1), 13, 2023
682023
Predicting evolutionary site variability from structure in viral proteins: buriedness, packing, flexibility, and design
A Shahmoradi, DK Sydykova, SJ Spielman, EL Jackson, ET Dawson, ...
Journal of molecular evolution 79, 130-142, 2014
532014
Cross-species comparison of site-specific evolutionary-rate variation in influenza haemagglutinin
AG Meyer, ET Dawson, CO Wilke
Philosophical Transactions of the Royal Society B: Biological Sciences 368 …, 2013
382013
Sequence variation aware genome references and read mapping with the variation graph toolkit
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
BioRxiv, 234856, 2017
312017
Limited utility of residue masking for positive-selection inference
SJ Spielman, ET Dawson, CO Wilke
Molecular biology and evolution 31 (9), 2496-2500, 2014
172014
Vcflib and tools for processing the VCF variant call format. bioRxiv
E Garrison, ZN Kronenberg, ET Dawson, BS Pedersen, P Prins
Preprint]. Available from: https://doi. org/10.1101/2021.05 21, 2021
102021
A crowdsourced set of curated structural variants for the human genome
LM Chapman, N Spies, P Pai, CS Lim, A Carroll, G Narzisi, CM Watson, ...
PLoS computational biology 16 (6), e1007933, 2020
72020
An international virtual hackathon to build tools for the analysis of structural variants within species ranging from coronaviruses to vertebrates
AM Mc Cartney, M Mahmoud, M Jochum, DP Agustinho, B Zorman, ...
F1000Research 10, 2021
52021
GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats
ET Dawson, R Durbin
Journal of open source software 4 (33), 2019
52019
ReactomeFIViz: a Cytoscape app for pathway and network-based data analysis. F1000Res. 2014; 3: 146
G Wu, E Dawson, A Duong, R Haw, L Stein
5
SVCurator: a crowdsourcing app to visualize evidence of structural variants for the human genome
LM Chapman, N Spies, P Pai, CS Lim, A Carroll, G Narzisi, CM Watson, ...
BioRxiv, 581264, 2019
42019
Genomic characterization of cervical lymph node metastases in papillary thyroid carcinoma following the Chornobyl accident
LM Morton, OW Lee, DM Karyadi, TI Bogdanova, C Stewart, SW Hartley, ...
Nature Communications 15 (1), 5053, 2024
32024
Viral coinfection analysis using a MinHash toolkit
ET Dawson, S Wagner, D Roberson, M Yeager, J Boland, E Garrison, ...
BMC bioinformatics 20, 1-10, 2019
32019
Abstract PO-055: Molecular characterization of papillary thyroid cancer in relation to ionizing radiation dose following the Chernobyl accident
LM Morton, D Karyadi, C Stewart, T Bogdanova, E Dawson, M Steinberg, ...
Clinical Cancer Research 27 (8_Supplement), PO-055-PO-055, 2021
12021
rkmh: a MinHash toolbox for analyzing HPV coinfections
ET Dawson, S Wagner, D Roberson, M Yeager, J Boland, E Garrison, ...
Cancer Research 78 (13_Supplement), 3273-3273, 2018
12018
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