| EMRinger: side chain–directed model and map validation for 3D cryo-electron microscopy BA Barad, N Echols, RYR Wang, Y Cheng, F DiMaio, PD Adams, ... Nature methods 12 (10), 943-946, 2015 | 825 | 2015 |
| Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta RYR Wang, Y Song, BA Barad, Y Cheng, JS Fraser, F DiMaio Elife 5, e17219, 2016 | 462 | 2016 |
| Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge CL Lawson, A Kryshtafovych, PD Adams, PV Afonine, ML Baker, ... Nature methods 18 (2), 156-164, 2021 | 100 | 2021 |
| Determination of ubiquitin fitness landscapes under different chemical stresses in a classroom setting D Mavor, K Barlow, S Thompson, BA Barad, AR Bonny, CL Cario, ... Elife 5, e15802, 2016 | 90 | 2016 |
| Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme MC Thompson, BA Barad, AM Wolff, H Sun Cho, F Schotte, DMC Schwarz, ... Nature chemistry 11 (11), 1058-1066, 2019 | 89 | 2019 |
| XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction JL Thomaston, RA Woldeyes, T Nakane, A Yamashita, T Tanaka, ... Proceedings of the National Academy of Sciences 114 (51), 13357-13362, 2017 | 81 | 2017 |
| Quantifying organellar ultrastructure in cryo-electron tomography using a surface morphometrics pipeline BA Barad, M Medina, D Fuentes, RL Wiseman, DA Grotjahn Journal of Cell Biology 222 (4), e202204093, 2023 | 43* | 2023 |
| Mapping protein dynamics at high spatial resolution with temperature-jump X-ray crystallography AM Wolff, E Nango, ID Young, AS Brewster, M Kubo, T Nomura, ... Nature chemistry 15 (11), 1549-1558, 2023 | 40* | 2023 |
| CellPAINT: turnkey illustration of molecular cell biology A Gardner, L Autin, D Fuentes, M Maritan, BA Barad, M Medina, AJ Olson, ... Frontiers in bioinformatics 1, 660936, 2021 | 23 | 2021 |
| Differences in the chitinolytic activity of mammalian chitinases on soluble and insoluble substrates BA Barad, L Liu, RE Diaz, R Basilio, SJ Van Dyken, RM Locksley, ... Protein Science 29 (4), 952-963, 2020 | 23 | 2020 |
| Synthetic essentiality of metabolic regulator PDHK1 in PTEN-deficient cells and cancers N Chatterjee, E Pazarentzos, MK Mayekar, P Gui, DV Allegakoen, ... Cell reports 28 (9), 2317-2330. e8, 2019 | 22 | 2019 |
| Nanoscale details of mitochondrial constriction revealed by cryoelectron tomography SK Mageswaran, DA Grotjahn, X Zeng, BA Barad, M Medina, MH Hoang, ... Biophysical Journal 122 (18), 3768-3782, 2023 | 20 | 2023 |
| Overcoming resolution attenuation during tilted cryo-EM data collection S Aiyer, PR Baldwin, SM Tan, Z Shan, J Oh, A Mehrani, ME Bowman, ... Nature communications 15 (1), 389, 2024 | 9 | 2024 |
| Cytoplasmic ribosomes on mitochondria alter the local membrane environment for protein import YT Chang, BA Barad, J Hamid, H Rahmani, BM Zid, DA Grotjahn Journal of Cell Biology 224 (4), 2025 | 2 | 2025 |
| BPS2025-Structural mapping of mitochondrial co-translational import in cells DA Grotjahn, YT Chang, BA Barad, H Rahmani, BM Zid Biophysical Journal 124 (3), 7a, 2025 | | 2025 |
| BPS2025-Replication organelles of arboviruses through the lens of a cryo-electron microscope S Dahmane, T Laurent, E Schexnaydre, J Zhang, N Chotiwan, BK Singh, ... Biophysical Journal 124 (3), 338a, 2025 | | 2025 |
| Cryo-electron tomography reveals coupled flavivirus replication, budding and maturation S Dahmane, E Schexnaydre, J Zhang, E Rosendal, N Chotiwan, ... bioRxiv, 2024.10. 13.618056, 2024 | | 2024 |
| MidSurfer: A Parameter-Free Approach for Mid-Surface Extraction from Segmented Volumetric Data E Boneš, D Khan, C Bohak, BA Barad, DA Grotjahn, I Viola, T Theußl arXiv preprint arXiv:2405.19339, 2024 | | 2024 |
| Quantifying Organellar Ultrastructure in Cryo-Electron Tomography Using a Surface Morphometrics Pipeline DA Grotjahn, BA Barad, M Medina, D Fuentes, RL Wiseman Acta Cryst 79, a195, 2023 | | 2023 |
| Mutant Chitinase With Enhanced Expression and Activity B Barad, J Fraser, S Van Dyken, R Locksley US Patent App. 17/505,561, 2022 | | 2022 |
James S. FraserProfessor, University of California San FranciscoVerified email at ucsf.edu
