Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1228 | 2018 |
Optimizing methods and dodging pitfalls in microbiome research D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke, A Lauder, ... Microbiome 5, 1-14, 2017 | 556 | 2017 |
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries JS Leiby, K McCormick, S Sherrill-Mix, EL Clarke, LR Kessler, LJ Taylor, ... Microbiome 6, 1-11, 2018 | 278 | 2018 |
Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments EL Clarke, LJ Taylor, C Zhao, A Connell, JJ Lee, B Fett, FD Bushman, ... Microbiome 7, 1-13, 2019 | 181 | 2019 |
Ggbeeswarm: Categorical scatter (violin point) plots E Clarke, S Sherrill-Mix, C Dawson CRAN: Contributed Packages, 2016 | 155 | 2016 |
Microbial lineages in sarcoidosis. A metagenomic analysis tailored for low–microbial content samples EL Clarke, AP Lauder, CE Hofstaedter, Y Hwang, AS Fitzgerald, I Imai, ... American journal of respiratory and critical care medicine 197 (2), 225-234, 2018 | 77 | 2018 |
Modeling altered T-cell development with induced pluripotent stem cells from patients with RAG1-dependent immune deficiencies PM Brauer, IM Pessach, E Clarke, JH Rowe, L Ott de Bruin, YN Lee, ... Blood, The Journal of the American Society of Hematology 128 (6), 783-793, 2016 | 52* | 2016 |
The Gene Wiki in 2011: community intelligence applied to human gene annotation BM Good, EL Clarke, L de Alfaro, AI Su Nucleic acids research 40 (D1), D1255-D1261, 2012 | 50 | 2012 |
Bidirectional transfer of Anelloviridae lineages between graft and host during lung transplantation AA Abbas, JC Young, EL Clarke, JM Diamond, I Imai, AR Haas, E Cantu, ... American Journal of Transplantation 19 (4), 1086-1097, 2019 | 40 | 2019 |
Molecular analysis of bacterial contamination on stethoscopes in an intensive care unit VR Knecht, JE McGinniss, HM Shankar, EL Clarke, BJ Kelly, I Imai, ... Infection Control & Hospital Epidemiology 40 (2), 171-177, 2019 | 40 | 2019 |
A task-based approach for Gene Ontology evaluation EL Clarke, S Loguercio, BM Good, AI Su Journal of biomedical semantics 4, 1-11, 2013 | 39 | 2013 |
swga: A primer design toolkit for selective whole genome amplification EL Clarke, SA Sundararaman, SN Seifert, FD Bushman, BH Hahn, ... Bioinformatics 33 (14), 2071-2077, 2017 | 36 | 2017 |
T cell dynamics and response of the microbiota after gene therapy to treat X-linked severe combined immunodeficiency EL Clarke, AJ Connell, E Six, NA Kadry, AA Abbas, Y Hwang, JK Everett, ... Genome medicine 10, 1-14, 2018 | 31 | 2018 |
Sherrill-Mix S. ggbeeswarm: Categorical Scatter (Violin Point) Plots. 2017 E Clarke | 28 | |
Lack of detection of a human placenta microbiome in samples from preterm and term deliveries. Microbiome 6: 196 JS Leiby, K McCormick, S Sherrill-Mix, EL Clarke, LR Kessler, LJ Taylor, ... | 23 | 2018 |
Upper respiratory dysbiosis with a facultative-dominated ecotype in advanced lung disease and dynamic change after lung transplant A Simon-Soro, MB Sohn, JE McGinniss, I Imai, MC Brown, VR Knecht, ... Annals of the American Thoracic Society 16 (11), 1383-1391, 2019 | 18 | 2019 |
Linking genes to diseases with a SNPedia-Gene Wiki mashup BM Good, EL Clarke, S Loguercio, AI Su Journal of biomedical semantics 3, 1-10, 2012 | 16 | 2012 |
Building a biomedical semantic network in Wikipedia with Semantic Wiki Links BM Good, EL Clarke, S Loguercio, AI Su Database, 2012 | 13 | 2012 |
Optimizing methods and dodging pitfalls in microbiome research. Microbiome. 2017; 5 (1): 52 D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke Epub 2017/05/10. doi: 10.1186/s40168-017-0267-5. PubMed PMID: 28476139, 0 | 12 | |
Optimizing methods and dodging pitfalls in microbiome research. Microbiome. 2017; 5: 52 D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke | 12 | |