| Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012 | 10134 | 2012 |
| TM4: a free, open-source system for microarray data management and analysis AI Saeed, V Sharov, J White, J Li, W Liang, N Bhagabati, J Braisted, ... Biotechniques 34 (2), 374-378, 2003 | 5405 | 2003 |
| A framework for human microbiome research Nature 486 (7402), 215-221, 2012 | 2384* | 2012 |
| [9] TM4 microarray software suite AI Saeed, NK Bhagabati, JC Braisted, W Liang, V Sharov, EA Howe, J Li, ... Methods in enzymology 411, 134-193, 2006 | 1862 | 2006 |
| Metabolic reconstruction for metagenomic data and its application to the human microbiome S Abubucker, N Segata, J Goll, AM Schubert, J Izard, BL Cantarel, ... PLoS computational biology 8 (6), e1002358, 2012 | 1171 | 2012 |
| Macronuclear Genome Sequence of the Ciliate Tetrahymena thermophila, a Model Eukaryote JA Eisen, RS Coyne, M Wu, D Wu, M Thiagarajan, JR Wortman, ... PLoS biology 4 (9), e286, 2006 | 870 | 2006 |
| Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities. Cell, 2019 | 575 | 2019 |
| Genomic insights into the Ixodes scapularis tick vector of Lyme disease Nature communications 7 (10507), 2016 | 501 | 2016 |
| Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ... Cell 182 (1), 200-225. e35, 2020 | 465 | 2020 |
| Integrated proteogenomic characterization of clear cell renal cell carcinoma DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ... Cell 179 (4), 964-983. e31, 2019 | 455 | 2019 |
| Proteogenomic and metabolomic characterization of human glioblastoma LB Wang, A Karpova, MA Gritsenko, JE Kyle, S Cao, Y Li, D Rykunov, ... Cancer cell 39 (4), 509-528. e20, 2021 | 395 | 2021 |
| Proteogenomic characterization of endometrial carcinoma Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ... Cell 180 (4), 729-748. e26, 2020 | 329 | 2020 |
| Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy K Krug, EJ Jaehnig, S Satpathy, L Blumenberg, A Karpova, M Anurag, ... Cell 183 (5), 1436-1456. e31, 2020 | 318 | 2020 |
| Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton ML Cuvelier, AE Allen, A Monier, JP McCrow, M Messié, SG Tringe, ... Proceedings of the National Academy of Sciences 107 (33), 14679-14684, 2010 | 305 | 2010 |
| Proteogenomic characterization of pancreatic ductal adenocarcinoma L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage, K Krug, DJ Clark, ... Cell 184 (19), 5031-5052. e26, 2021 | 280 | 2021 |
| Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma C Huang, L Chen, SR Savage, RV Eguez, Y Dou, Y Li, ... Cancer cell 39 (3), 361-379. e16, 2021 | 222 | 2021 |
| Functional tradeoffs underpin salinity-driven divergence in microbial community composition CL Dupont, J Larsson, S Yooseph, K Ininbergs, J Goll, ... PloS one 9 (2), e89549, 2014 | 200 | 2014 |
| A proteogenomic portrait of lung squamous cell carcinoma S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia, C Kumar-Sinha, ... Cell 184 (16), 4348-4371. e40, 2021 | 197 | 2021 |
| METAREP: JCVI metagenomics reports—an open source tool for high-performance comparative metagenomics J Goll, DB Rusch, DM Tanenbaum, M Thiagarajan, K Li, BA Methé, ... Bioinformatics 26 (20), 2631-2632, 2010 | 154 | 2010 |
| Comparative genomic analysis and phylogenetic position of Theileria equi LS Kappmeyer, M Thiagarajan, DR Herndon, JD Ramsay, E Caler, ... BMC genomics 13, 1-13, 2012 | 137 | 2012 |
