| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 13902 | 2012 |
| Comprehensive mapping of long-range interactions reveals folding principles of the human genome E Lieberman-Aiden, NL Van Berkum, L Williams, M Imakaev, T Ragoczy, ... science 326 (5950), 289-293, 2009 | 8536 | 2009 |
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6011 | 2007 |
| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 5992 | 2015 |
| Systematic localization of common disease-associated variation in regulatory DNA MT Maurano, R Humbert, E Rynes, RE Thurman, E Haugen, H Wang, ... Science 337 (6099), 1190-1195, 2012 | 3827 | 2012 |
| Genetic effects on gene expression across human tissues GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ... Nature 550 (7675), 204-213, 2017 | 3285 | 2017 |
| The accessible chromatin landscape of the human genome RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ... Nature 489 (7414), 75-82, 2012 | 3056 | 2012 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1907 | 2014 |
| Comprehensive analysis of the chromatin landscape in Drosophila melanogaster PV Kharchenko, AA Alekseyenko, YB Schwartz, A Minoda, NC Riddle, ... Nature 471 (7339), 480-485, 2011 | 981 | 2011 |
| An expansive human regulatory lexicon encoded in transcription factor footprints S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ... Nature 489 (7414), 83-90, 2012 | 948 | 2012 |
| BEDOPS: high-performance genomic feature operations S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ... Bioinformatics 28 (14), 1919-1920, 2012 | 891 | 2012 |
| Resolving the complexity of the human genome using single-molecule sequencing MJP Chaisson, J Huddleston, MY Dennis, PH Sudmant, M Malig, ... Nature 517 (7536), 608-611, 2015 | 850 | 2015 |
| Global mapping of protein-DNA interactions in vivo by digital genomic footprinting JR Hesselberth, X Chen, Z Zhang, PJ Sabo, R Sandstrom, AP Reynolds, ... Nature methods 6 (4), 283-289, 2009 | 726 | 2009 |
| Widespread plasticity in CTCF occupancy linked to DNA methylation H Wang, MT Maurano, H Qu, KE Varley, J Gertz, F Pauli, K Lee, ... Genome research 22 (9), 1680-1688, 2012 | 645 | 2012 |
| Sequencing newly replicated DNA reveals widespread plasticity in human replication timing RS Hansen, S Thomas, R Sandstrom, TK Canfield, RE Thurman, ... Proceedings of the National Academy of Sciences 107 (1), 139-144, 2010 | 610 | 2010 |
| Cell-of-origin chromatin organization shapes the mutational landscape of cancer P Polak, R Karlić, A Koren, R Thurman, R Sandstrom, MS Lawrence, ... Nature 518 (7539), 360-364, 2015 | 579 | 2015 |
| Dynamic landscape and regulation of RNA editing in mammals MH Tan, Q Li, R Shanmugam, R Piskol, J Kohler, AN Young, KI Liu, ... Nature 550 (7675), 249-254, 2017 | 531 | 2017 |
| Circuitry and dynamics of human transcription factor regulatory networks S Neph, AB Stergachis, A Reynolds, R Sandstrom, E Borenstein, ... Cell 150 (6), 1274-1286, 2012 | 526 | 2012 |
| Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification RM Samstein, A Arvey, SZ Josefowicz, X Peng, A Reynolds, R Sandstrom, ... Cell 151 (1), 153-166, 2012 | 502 | 2012 |
| Genome-Wide Association Study in Asian Populations Identifies Variants in ETS1 and WDFY4 Associated with Systemic Lupus Erythematosus W Yang, N Shen, DQ Ye, Q Liu, Y Zhang, XX Qian, N Hirankarn, D Ying, ... PLoS genetics 6 (2), e1000841, 2010 | 458 | 2010 |
