| Amplification-free detection of SARS-CoV-2 with CRISPR-Cas13a and mobile phone microscopy P Fozouni, S Son, MD de León Derby, GJ Knott, CN Gray, MV D’Ambrosio, ... Cell 184 (2), 323-333. e9, 2021 | 864 | 2021 |
| Optimizing methods and dodging pitfalls in microbiome research D Kim, CE Hofstaedter, C Zhao, L Mattei, C Tanes, E Clarke, A Lauder, ... Microbiome 5, 1-14, 2017 | 567 | 2017 |
| The stepwise assembly of the neonatal virome is modulated by breastfeeding G Liang, C Zhao, H Zhang, L Mattei, S Sherrill-Mix, K Bittinger, LR Kessler, ... Nature 581 (7809), 470-474, 2020 | 261 | 2020 |
| Accelerated RNA detection using tandem CRISPR nucleases TY Liu, GJ Knott, DCJ Smock, JJ Desmarais, S Son, A Bhuiya, ... Nature chemical biology 17 (9), 982-988, 2021 | 204 | 2021 |
| The gut microbiome regulates the increases in depressive-type behaviors and in inflammatory processes in the ventral hippocampus of stress vulnerable rats J Pearson-Leary, C Zhao, K Bittinger, D Eacret, S Luz, AS Vigderman, ... Molecular psychiatry 25 (5), 1068-1079, 2020 | 190 | 2020 |
| Sunbeam: an extensible pipeline for analyzing metagenomic sequencing experiments EL Clarke, LJ Taylor, C Zhao, A Connell, JJ Lee, B Fett, FD Bushman, ... Microbiome 7 (1), 46, 2019 | 184 | 2019 |
| Segmented filamentous bacteria prevent and cure rotavirus infection Z Shi, J Zou, Z Zhang, X Zhao, J Noriega, B Zhang, C Zhao, H Ingle, ... Cell 179 (3), 644-658. e13, 2019 | 150 | 2019 |
| FXR-dependent modulation of the human small intestinal microbiome by the bile acid derivative obeticholic acid ES Friedman, Y Li, TCD Shen, J Jiang, L Chau, L Adorini, F Babakhani, ... Gastroenterology 155 (6), 1741-1752. e5, 2018 | 147 | 2018 |
| Cervicovaginal fungi and bacteria associated with cervical intraepithelial neoplasia and high-risk human papillomavirus infections in a hispanic population F Godoy-Vitorino, J Romaguera, C Zhao, D Vargas-Robles, ... Frontiers in microbiology 9, 2533, 2018 | 129 | 2018 |
| Bacterial colonization reprograms the neonatal gut metabolome K Bittinger, C Zhao, Y Li, E Ford, ES Friedman, J Ni, CV Kulkarni, J Cai, ... Nature microbiology 5 (6), 838-847, 2020 | 105 | 2020 |
| Multi-omic analysis of the interaction between Clostridioides difficile infection and pediatric inflammatory bowel disease FD Bushman, M Conrad, Y Ren, C Zhao, C Gu, C Petucci, MS Kim, ... Cell host & microbe 28 (3), 422-433. e7, 2020 | 59 | 2020 |
| Association of enterovirus D68 with acute flaccid myelitis, Philadelphia, Pennsylvania, USA, 2009–2018 P Uprety, D Curtis, M Elkan, J Fink, R Rajagopalan, C Zhao, K Bittinger, ... Emerging infectious diseases 25 (9), 1676, 2019 | 57 | 2019 |
| Characterisation of the nasal microbiota in granulomatosis with polyangiitis RL Rhee, AG Sreih, CE Najem, PC Grayson, C Zhao, K Bittinger, ... Annals of the rheumatic diseases 77 (10), 1448-1453, 2018 | 54 | 2018 |
| An automatic ocular artifacts removal method based on wavelet-enhanced canonical correlation analysis C Zhao, T Qiu 2011 Annual International Conference of the IEEE Engineering in Medicine and …, 2011 | 34 | 2011 |
| Fast and accurate metagenotyping of the human gut microbiome with GT-Pro ZJ Shi, B Dimitrov, C Zhao, S Nayfach, KS Pollard Nature biotechnology 40 (4), 507-516, 2022 | 29 | 2022 |
| MIDAS2: metagenomic intra-species diversity analysis system C Zhao, B Dimitrov, M Goldman, S Nayfach, KS Pollard Bioinformatics 39 (1), btac713, 2023 | 25 | 2023 |
| Pitfalls of genotyping microbial communities with rapidly growing genome collections C Zhao, ZJ Shi, KS Pollard Cell systems 14 (2), 160-176. e3, 2023 | 22 | 2023 |
| The macronutrient composition of infant formula produces differences in gut microbiota maturation that associate with weight gain velocity and weight status JA Mennella, Y Li, K Bittinger, ES Friedman, C Zhao, H Li, GD Wu, ... Nutrients 14 (6), 1241, 2022 | 17 | 2022 |
| UniAlign: protein structure alignment meets evolution C Zhao, A Sacan Bioinformatics 31 (19), 3139-3146, 2015 | 11 | 2015 |
| Investigating hospital Mycobacterium chelonae infection using whole genome sequencing and hybrid assembly CH Gu, C Zhao, C Hofstaedter, P Tebas, L Glaser, R Baldassano, ... PLoS One 15 (11), e0236533, 2020 | 9 | 2020 |
Kyle BittingerUniversity of PennsylvaniaVerified email at mail.med.upenn.edu
