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Xueqing Zou
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Landscape of somatic mutations in 560 breast cancer whole-genome sequences
S Nik-Zainal, H Davies, J Staaf, M Ramakrishna, D Glodzik, X Zou, ...
Nature 534 (7605), 47-54, 2016
22782016
Pan-cancer analysis of whole genomes
Nature 578 (7793), 82-93, 2020
1865*2020
HRDetect is a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures
H Davies, D Glodzik, S Morganella, LR Yates, J Staaf, X Zou, ...
Nature medicine 23 (4), 517-525, 2017
10032017
A compendium of mutational signatures of environmental agents
JE Kucab, X Zou, S Morganella, M Joel, AS Nanda, E Nagy, C Gomez, ...
Cell 177 (4), 821-836. e16, 2019
5592019
The topography of mutational processes in breast cancer genomes
S Morganella, LB Alexandrov, D Glodzik, X Zou, H Davies, J Staaf, ...
Nature communications 7 (1), 11383, 2016
2862016
Computational investigation of DNA detection using graphene nanopores
C Sathe, X Zou, JP Leburton, K Schulten
ACS nano 5 (11), 8842-8851, 2011
2242011
A practical framework and online tool for mutational signature analyses show intertissue variation and driver dependencies
A Degasperi, TD Amarante, J Czarnecki, S Shooter, X Zou, D Glodzik, ...
Nature cancer 1 (2), 249-263, 2020
2082020
Mutational signatures: emerging concepts, caveats and clinical applications
G Koh, A Degasperi, X Zou, S Momen, S Nik-Zainal
Nature Reviews Cancer 21 (10), 619-637, 2021
2012021
Detection and quantification of methylation in DNA using solid-state nanopores
J Shim, GI Humphreys, BM Venkatesan, JM Munz, X Zou, C Sathe, ...
Scientific reports 3 (1), 1389, 2013
2012013
Cytosine methylation alters DNA mechanical properties
PMD Severin, X Zou, HE Gaub, K Schulten
Nucleic acids research 39 (20), 8740-8751, 2011
1812011
Substitution mutational signatures in whole-genome–sequenced cancers in the UK population
A Degasperi, X Zou, T Dias Amarante, A Martinez-Martinez, GCC Koh, ...
Science 376 (6591), abl9283, 2022
1752022
Validating the concept of mutational signatures with isogenic cell models
X Zou, M Owusu, R Harris, SP Jackson, JI Loizou, S Nik-Zainal
Nature communications 9 (1), 1744, 2018
1622018
Recognition of methylated DNA through methyl-CpG binding domain proteins
X Zou, W Ma, IA Solov'Yov, C Chipot, K Schulten
Nucleic acids research 40 (6), 2747-2758, 2012
1452012
A systematic CRISPR screen defines mutational mechanisms underpinning signatures caused by replication errors and endogenous DNA damage
X Zou, GCC Koh, AS Nanda, A Degasperi, K Urgo, TI Roumeliotis, ...
Nature cancer 2 (6), 643-657, 2021
1202021
Whole-genome sequencing reveals breast cancers with mismatch repair deficiency
H Davies, S Morganella, CA Purdie, SJ Jang, E Borgen, H Russnes, ...
Cancer research 77 (18), 4755-4762, 2017
1112017
A somatic-mutational process recurrently duplicates germline susceptibility loci and tissue-specific super-enhancers in breast cancers
D Glodzik, S Morganella, H Davies, PT Simpson, Y Li, X Zou, ...
Nature genetics 49 (3), 341-348, 2017
922017
Nanoelectromechanics of methylated DNA in a synthetic nanopore
U Mirsaidov, W Timp, X Zou, V Dimitrov, K Schulten, AP Feinberg, G Timp
Biophysical journal 96 (4), L32-L34, 2009
772009
Substantial somatic genomic variation and selection for BCOR mutations in human induced pluripotent stem cells
FJ Rouhani, X Zou, P Danecek, C Badja, TD Amarante, G Koh, Q Wu, ...
Nature Genetics 54 (9), 1406-1416, 2022
632022
Partially methylated domains are hypervariable in breast cancer and fuel widespread CpG island hypermethylation
AB Brinkman, S Nik-Zainal, F Simmer, FG Rodríguez-González, M Smid, ...
Nature communications 10 (1), 1749, 2019
632019
Effects of cytosine hydroxymethylation on DNA strand separation
PMD Severin, X Zou, K Schulten, HE Gaub
Biophysical journal 104 (1), 208-215, 2013
502013
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