Blake A. Simmons
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MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
YW Wu, BA Simmons, SW Singer
Bioinformatics 32 (4), 605-607, 2016
Comparison of dilute acid and ionic liquid pretreatment of switchgrass: biomass recalcitrance, delignification and enzymatic saccharification
C Li, B Knierim, C Manisseri, R Arora, HV Scheller, M Auer, KP Vogel, ...
Bioresource technology 101 (13), 4900-4906, 2010
The challenge of enzyme cost in the production of lignocellulosic biofuels
D Klein‐Marcuschamer, P Oleskowicz‐Popiel, BA Simmons, HW Blanch
Biotechnology and bioengineering 109 (4), 1083-1087, 2012
Influence of connectivity and porosity on ligand-based luminescence in zinc metal− organic frameworks
CA Bauer, TV Timofeeva, TB Settersten, BD Patterson, VH Liu, ...
Journal of the American Chemical Society 129 (22), 7136-7144, 2007
MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
YW Wu, YH Tang, SG Tringe, BA Simmons, SW Singer
Microbiome 2, 1-18, 2014
Dielectrophoretic concentration and separation of live and dead bacteria in an array of insulators
BH Lapizco-Encinas, BA Simmons, EB Cummings, Y Fintschenko
Analytical chemistry 76 (6), 1571-1579, 2004
Visualization of biomass solubilization and cellulose regeneration during ionic liquid pretreatment of switchgrass
S Singh, BA Simmons, KP Vogel
Biotechnology and bioengineering 104 (1), 68-75, 2009
Insulator‐based dielectrophoresis for the selective concentration and separation of live bacteria in water
BH Lapizco‐Encinas, BA Simmons, EB Cummings, Y Fintschenko
Electrophoresis 25 (10‐11), 1695-1704, 2004
Transition of cellulose crystalline structure and surface morphology of biomass as a function of ionic liquid pretreatment and its relation to enzymatic hydrolysis
G Cheng, P Varanasi, C Li, H Liu, YB Melnichenko, BA Simmons, ...
Biomacromolecules 12 (4), 933-941, 2011
Design of low-cost ionic liquids for lignocellulosic biomass pretreatment
A George, A Brandt, K Tran, SMSNS Zahari, D Klein-Marcuschamer, ...
Green Chemistry 17 (3), 1728-1734, 2015
Synthesis of three advanced biofuels from ionic liquid-pretreated switchgrass using engineered Escherichia coli
G Bokinsky, PP Peralta-Yahya, A George, BM Holmes, EJ Steen, ...
Proceedings of the National Academy of Sciences 108 (50), 19949-19954, 2011
In vivo lipidomics using single-cell Raman spectroscopy
H Wu, JV Volponi, AE Oliver, AN Parikh, BA Simmons, S Singh
Proceedings of the National Academy of Sciences 108 (9), 3809-3814, 2011
Recent innovations in analytical methods for the qualitative and quantitative assessment of lignin
JS Lupoi, S Singh, R Parthasarathi, BA Simmons, RJ Henry
Renewable and Sustainable Energy Reviews 49, 871-906, 2015
A single-base resolution map of an archaeal transcriptome
O Wurtzel, R Sapra, F Chen, Y Zhu, BA Simmons, R Sorek
Genome research 20 (1), 133-141, 2010
Mainstreaming the Economics of Nature
TEEB Geneva, Switzerland, 2010
Understanding the interactions of cellulose with ionic liquids: a molecular dynamics study
H Liu, KL Sale, BM Holmes, BA Simmons, S Singh
The Journal of Physical Chemistry B 114 (12), 4293-4301, 2010
Techno‐economic analysis of a lignocellulosic ethanol biorefinery with ionic liquid pre‐treatment
D Klein‐Marcuschamer, BA Simmons, HW Blanch
Biofuels, Bioproducts and Biorefining 5 (5), 562-569, 2011
A mosaic monoploid reference sequence for the highly complex genome of sugarcane
O Garsmeur, G Droc, R Antonise, J Grimwood, B Potier, K Aitken, ...
Nature communications 9 (1), 2638, 2018
Efficient biomass pretreatment using ionic liquids derived from lignin and hemicellulose
AM Socha, R Parthasarathi, J Shi, S Pattathil, D Whyte, M Bergeron, ...
Proceedings of the national academy of sciences 111 (35), E3587-E3595, 2014
Advances in modifying lignin for enhanced biofuel production
BA Simmons, D Loqué, J Ralph
Current opinion in plant biology 13 (3), 312-319, 2010
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