Rui Liu
Rui Liu
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PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
K Wang, M Li, D Hadley, R Liu, J Glessner, SFA Grant, H Hakonarson, ...
Genome research 17 (11), 1665-1674, 2007
Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain
BB Lake, R Ai, GE Kaeser, NS Salathia, YC Yung, R Liu, A Wildberg, ...
Science 352 (6293), 1586-1590, 2016
Non-invasive early detection of cancer four years before conventional diagnosis using a blood test
X Chen, J Gole, A Gore, Q He, M Lu, J Min, Z Yuan, X Yang, Y Jiang, ...
Nature communications 11 (1), 1-10, 2020
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis
J Fan, N Salathia, R Liu, GE Kaeser, YC Yung, JL Herman, F Kaper, ...
Nature methods 13 (3), 241-244, 2016
Tet1 controls meiosis by regulating meiotic gene expression
S Yamaguchi, K Hong, R Liu, L Shen, A Inoue, D Diep, K Zhang, Y Zhang
Nature 492 (7429), 443-447, 2012
Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming
S Yamaguchi, K Hong, R Liu, A Inoue, L Shen, K Zhang, Y Zhang
Cell research 23 (3), 329-339, 2013
The lncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression
W Jiang, Y Liu, R Liu, K Zhang, Y Zhang
Cell reports 11 (1), 137-148, 2015
Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
Z Ma, H Wang, Y Cai, H Wang, K Niu, X Wu, H Ma, Y Yang, W Tong, F Liu, ...
Elife 7, e35368, 2018
Ultrasensitive and affordable assay for early detection of primary liver cancer using plasma cell‐free DNA fragmentomics
X Zhang, Z Wang, W Tang, X Wang, R Liu, H Bao, X Chen, Y Wei, S Wu, ...
Hepatology 76 (2), 317-329, 2022
Assessing characteristics of RNA amplification methods for single cell RNA sequencing
HR Dueck, R Ai, A Camarena, B Ding, R Dominguez, OV Evgrafov, ...
BMC genomics 17, 1-22, 2016
A multilocus blood-based assay targeting circulating tumor DNA methylation enables early detection and early relapse prediction of colorectal cancer
G Cai, M Cai, Z Feng, R Liu, L Liang, P Zhou, B Zhu, S Mo, H Wang, X Lan, ...
Gastroenterology 161 (6), 2053-2056. e2, 2021
Early detection of molecular residual disease and risk stratification for stage I to III colorectal cancer via circulating tumor DNA methylation
S Mo, L Ye, D Wang, L Han, S Zhou, H Wang, W Dai, Y Wang, W Luo, ...
JAMA oncology 9 (6), 770-778, 2023
On the design of clone-based haplotyping
ZK Lo C, Liu R, Lee J, Robasky K, Byrne S, Aach J, Church G, Bafna V
Genome Biology, 2013
Fecal multidimensional assay for non-invasive detection of colorectal cancer: fecal immunochemical test, stool DNA mutation, methylation, and intestinal bacteria analysis
S Mo, H Wang, L Han, W Xiang, W Dai, P Zhao, F Pei, Z Su, C Ma, Q Li, ...
Frontiers in Oncology 11, 643136, 2021
Multidimensional cell-free DNA fragmentomic assay for detection of early-stage lung cancer
S Wang, F Meng, M Li, H Bao, X Chen, M Zhu, R Liu, X Xu, S Yang, X Wu, ...
American Journal of Respiratory and Critical Care Medicine 207 (9), 1203-1213, 2023
Performance validation of an amplicon-based targeted next-generation sequencing assay and mutation profiling of 648 Chinese colorectal cancer patients
Y Wang, H Liu, Y Hou, X Zhou, L Liang, Z Zhang, H Shi, S Xu, P Hu, ...
Virchows Archiv 472, 959-968, 2018
Motifs and cis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons
R Liu, S Hannenhalli, M Bucan
Genome Biology 10, 1-18, 2009
Noninvasive detection of pancreatic ductal adenocarcinoma using the methylation signature of circulating tumour DNA
H Wu, S Guo, X Liu, Y Li, Z Su, Q He, X Liu, Z Zhang, L Yu, X Shi, S Gao, ...
BMC medicine 20 (1), 458, 2022
Applying pharmacogenomics in therapeutics
X Feng, HG Xie
CRC Press, 2016
Delivering noninvasive prenatal testing in a clinical setting using semiconductor sequencing platform
Y Gao, B Xie, R Liu
Science China. Life Sciences 57 (7), 737, 2014
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