Simon Roux

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Matthew B SullivanProfessor, Ohio State University / Founding Director, Center of Microbiome ScienceDirección de correo verificada de osu.edu
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstituteDirección de correo verificada de lbl.gov
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryDirección de correo verificada de lbl.gov
Benjamin BolducThe Ohio State UniversityDirección de correo verificada de osu.edu
François EnaultMaître de conférenceDirección de correo verificada de univ-bpclermont.fr
Tanja WoykeDOE Joint Genome InstituteDirección de correo verificada de lbl.gov
Mart KrupovicHead of the Archaeal Virology Unit, Institut PasteurDirección de correo verificada de pasteur.fr
Stephen NayfachProfluent BioDirección de correo verificada de profluent.bio
Kelly C. WrightonColorado State UniversityDirección de correo verificada de colostate.edu
Natalia IvanovaDOE Joint Genome InstituteDirección de correo verificada de lbl.gov
Frederik SchulzDOE Joint Genome InstituteDirección de correo verificada de lbl.gov
Didier DEBROASUCADirección de correo verificada de uca.fr
Gareth (Gary) TrublStaff Scientist at Lawrence Livermore National LaboratoryDirección de correo verificada de llnl.gov
Natalie SolonenkoOhio State UniversityDirección de correo verificada de osu.edu
Neha J VargheseDOE Joint Genome InstituteDirección de correo verificada de lbl.gov
Ho Bin JangSenior Researcher at KVRI, Institute for Basic ScienceDirección de correo verificada de ibs.re.kr
Rebecca A. DalyScience Strategy & Operations Lead, Soil Health, SyngentaDirección de correo verificada de syngenta.com
TBK ReddyLawrence Berkeley National LaboratoryDirección de correo verificada de lbl.gov
Joanne B. EmersonAssociate Professor, University of California, DavisDirección de correo verificada de ucdavis.edu
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Theoretical Biology and BioinformaticsDirección de correo verificada de uni-jena.de

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Simon Roux

DOE Joint Genome Institute

Dirección de correo verificada de lbl.gov - Página principal

viral diversity virus evolution viruses of microbes metagenomics bioinformatics


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ... Microbiome 5, 1-16, 2017	1233	2017
VirSorter: mining viral signal from microbial genomic data S Roux, F Enault, BL Hurwitz, MB Sullivan PeerJ 3, e985, 2015	1015*	2015
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015	864	2015
CheckV assesses the quality and completeness of metagenome-assembled viral genomes S Nayfach, AP Camargo, F Schulz, E Eloe-Fadrosh, S Roux, NC Kyrpides Nature biotechnology 39 (5), 578-585, 2021	707	2021
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ... Nature, 2016	696	2016
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	695	2016
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015	679	2015
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks H Bin Jang, B Bolduc, O Zablocki, JH Kuhn, S Roux, EM Adriaenssens, ... Nature biotechnology 37 (6), 632-639, 2019	601	2019
Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019	598	2019
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	560	2021
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ... Microbiome 9, 1-13, 2021	525*	2021
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	443	2019
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes S Roux, SJ Hallam, T Woyke, MB Sullivan elife 4, e08490, 2015	440	2015
DRAM for distilling microbial metabolism to automate the curation of microbiome function M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ... Nucleic acids research 48 (16), 8883-8900, 2020	431	2020
Host-linked soil viral ecology along a permafrost thaw gradient JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ... Nature microbiology 3 (8), 870-880, 2018	387	2018
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ... Nucleic acids research 49 (D1), D751-D763, 2021	369	2021
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses F Enault, A Briet, L Bouteille, S Roux, MB Sullivan, MA Petit The ISME journal 11 (1), 237-247, 2017	342	2017
Gene expression changes and community turnover differentially shape the global ocean metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019	279	2019
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses S Roux, D Páez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 49 (D1), D764-D775, 2021	261	2021
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity S Roux, JB Emerson, EA Eloe-Fadrosh, MB Sullivan PeerJ 5, e3817, 2017	253	2017

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