Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software L Kamentsky, TR Jones, A Fraser, MA Bray, DJ Logan, KL Madden, ... Bioinformatics 27 (8), 1179-1180, 2011 | 1145 | 2011 |
Annotated high-throughput microscopy image sets for validation. V Ljosa, KL Sokolnicki, AE Carpenter Nature methods 9 (7), 637-637, 2012 | 587 | 2012 |
Multiplex cytological profiling assay to measure diverse cellular states SM Gustafsdottir, V Ljosa, KL Sokolnicki, J Anthony Wilson, D Walpita, ... PloS one 8 (12), e80999, 2013 | 267 | 2013 |
An image analysis toolbox for high-throughput C. elegans assays C Wählby, L Kamentsky, ZH Liu, T Riklin-Raviv, AL Conery, EJ O'rourke, ... Nature methods 9 (7), 714-716, 2012 | 203 | 2012 |
Toward performance-diverse small-molecule libraries for cell-based phenotypic screening using multiplexed high-dimensional profiling MJ Wawer, K Li, SM Gustafsdottir, V Ljosa, NE Bodycombe, MA Marton, ... Proceedings of the National Academy of Sciences 111 (30), 10911-10916, 2014 | 198 | 2014 |
Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment V Ljosa, PD Caie, R Ter Horst, KL Sokolnicki, EL Jenkins, S Daya, ... Journal of biomolecular screening 18 (10), 1321-1329, 2013 | 192 | 2013 |
A dataset of images and morphological profiles of 30 000 small-molecule treatments using the Cell Painting assay MA Bray, SM Gustafsdottir, MH Rohban, S Singh, V Ljosa, KL Sokolnicki, ... Gigascience 6 (12), giw014, 2017 | 162 | 2017 |
CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets D Dao, AN Fraser, J Hung, V Ljosa, S Singh, AE Carpenter Bioinformatics 32 (20), 3210-3212, 2016 | 147 | 2016 |
Introduction to the quantitative analysis of two-dimensional fluorescence microscopy images for cell-based screening V Ljosa, AE Carpenter PLoS computational biology 5 (12), e1000603, 2009 | 136 | 2009 |
APLA: Indexing arbitrary probability distributions V Ljosa, AK Singh 2007 IEEE 23rd International Conference on Data Engineering, 946-955, 2006 | 132 | 2006 |
Top-k spatial joins of probabilistic objects V Ljosa, AK Singh 2008 IEEE 24th International Conference on Data Engineering, 566-575, 2008 | 79 | 2008 |
Vivo: Visual vocabulary construction for mining biomedical images A Bhattacharya, V Ljosa, JY Pan, MR Verardo, H Yang, C Faloutsos, ... Fifth IEEE International Conference on Data Mining (ICDM'05), 8 pp., 2005 | 50 | 2005 |
Morphological profiles of RNAi-induced gene knockdown are highly reproducible but dominated by seed effects S Singh, X Wu, V Ljosa, MA Bray, F Piccioni, DE Root, JG Doench, ... PloS one 10 (7), e0131370, 2015 | 40 | 2015 |
Indexing spatially sensitive distance measures using multi-resolution lower bounds V Ljosa, A Bhattacharya, AK Singh Advances in Database Technology-EDBT 2006: 10th International Conference on …, 2006 | 40 | 2006 |
Resolving clustered worms via probabilistic shape models C Wählby, T Riklin-Raviv, V Ljosa, AL Conery, P Golland, FM Ausubel, ... 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro …, 2010 | 36 | 2010 |
Morphology-Guided Graph Search for Untangling Objects: C. elegans Analysis TR Raviv, V Ljosa, AL Conery, FM Ausubel, AE Carpenter, P Golland, ... Medical Image Computing and Computer-Assisted Intervention–MICCAI 2010: 13th …, 2010 | 28 | 2010 |
Speeding up whole-genome alignment by indexing frequency vectors T Kahveci, V Ljosa, AK Singh Bioinformatics 20 (13), 2122-2134, 2004 | 28 | 2004 |
High-throughput screens for fluorescent dye discovery V Ljosa, AE Carpenter Trends in biotechnology 26 (10), 527-530, 2008 | 25 | 2008 |
Probabilistic segmentation and analysis of horizontal cells V Ljosa, AK Singh Sixth International Conference on Data Mining (ICDM'06), 980-985, 2006 | 23 | 2006 |
LB-index: A multi-resolution index structure for images V Ljosa, A Bhattacharya, AK Singh 22nd International Conference on Data Engineering (ICDE'06), 144-144, 2006 | 10 | 2006 |