Michael J Sweredoski
Michael J Sweredoski
Proteome Exploration Laboratory at Caltech
Dirección de correo verificada de caltech.edu
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SCRATCH: a protein structure and structural feature prediction server
J Cheng, AZ Randall, MJ Sweredoski, P Baldi
Nucleic acids research 33 (suppl_2), W72-W76, 2005
8922005
Broad activation of the ubiquitin–proteasome system by Parkin is critical for mitophagy
NC Chan, AM Salazar, AH Pham, MJ Sweredoski, NJ Kolawa, ...
Human molecular genetics 20 (9), 1726-1737, 2011
7932011
The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3
CA McHugh, CK Chen, A Chow, CF Surka, C Tran, P McDonel, ...
Nature 521 (7551), 232-236, 2015
6942015
Human gut microbiota from autism spectrum disorder promote behavioral symptoms in mice
G Sharon, NJ Cruz, DW Kang, MJ Gandal, B Wang, YM Kim, EM Zink, ...
Cell 177 (6), 1600-1618. e17, 2019
2382019
Accurate prediction of protein disordered regions by mining protein structure data
J Cheng, MJ Sweredoski, P Baldi
Data mining and knowledge discovery 11 (3), 213-222, 2005
2292005
Cand1 promotes assembly of new SCF complexes through dynamic exchange of F box proteins
NW Pierce, JE Lee, X Liu, MJ Sweredoski, RLJ Graham, EA Larimore, ...
Cell 153 (1), 206-215, 2013
1932013
PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure
MJ Sweredoski, P Baldi
Bioinformatics 24 (12), 1459-1460, 2008
1872008
COBEpro: a novel system for predicting continuous B-cell epitopes
MJ Sweredoski, P Baldi
Protein Engineering, Design & Selection 22 (3), 113-120, 2009
1702009
Evaluation and optimization of mass spectrometric settings during data-dependent acquisition mode: focus on LTQ-Orbitrap mass analyzers
A Kalli, GT Smith, MJ Sweredoski, S Hess
Journal of proteome research 12 (7), 3071-3086, 2013
1342013
The top‐down, middle‐down, and bottom‐up mass spectrometry approaches for characterization of histone variants and their post‐translational modifications
A Moradian, A Kalli, MJ Sweredoski, S Hess
Proteomics 14 (4-5), 489-497, 2014
1292014
DOMpro: protein domain prediction using profiles, secondary structure, relative solvent accessibility, and recursive neural networks
J Cheng, MJ Sweredoski, P Baldi
Data Mining and Knowledge Discovery 13 (1), 1-10, 2006
1102006
A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins
MK Sung, TR Porras-Yakushi, JM Reitsma, FM Huber, MJ Sweredoski, ...
Elife 5, e19105, 2016
922016
TMBpro: secondary structure, β-contact and tertiary structure prediction of transmembrane β-barrel proteins
A Randall, J Cheng, M Sweredoski, P Baldi
Bioinformatics 24 (4), 513-520, 2008
852008
Glutamine triggers acetylation-dependent degradation of glutamine synthetase via the thalidomide receptor cereblon
T Van Nguyen, JE Lee, MJ Sweredoski, SJ Yang, SJ Jeon, JS Harrison, ...
Molecular cell 61 (6), 809-820, 2016
812016
Characterization of the Mycobacterium tuberculosis Proteome by Liquid Chromatography Mass Spectrometry-based Proteomics Techniques: A Comprehensive …
C Bell, GT Smith, MJ Sweredoski, S Hess
Journal of proteome research 11 (1), 119-130, 2012
752012
Identification of a functional docking site in the Rpn1 LRR domain for the UBA-UBL domain protein Ddi1
TA Gomez, N Kolawa, M Gee, MJ Sweredoski, RJ Deshaies
BMC biology 9 (1), 1-15, 2011
752011
The steady-state repertoire of human SCF ubiquitin ligase complexes does not require ongoing Nedd8 conjugation
JE Lee, MJ Sweredoski, RLJ Graham, NJ Kolawa, GT Smith, S Hess, ...
Molecular & Cellular Proteomics 10 (5), M110. 006460, 2011
702011
Cell-specific proteomic analysis in Caenorhabditis elegans
KP Yuet, MK Doma, JT Ngo, MJ Sweredoski, RLJ Graham, A Moradian, ...
Proceedings of the National Academy of Sciences 112 (9), 2705-2710, 2015
692015
Ribosomal proteins produced in excess are degraded by the ubiquitin–proteasome system
MK Sung, JM Reitsma, MJ Sweredoski, S Hess, RJ Deshaies
Molecular biology of the cell 27 (17), 2642-2652, 2016
622016
Identification of secreted bacterial proteins by noncanonical amino acid tagging
A Mahdavi, J Szychowski, JT Ngo, MJ Sweredoski, RLJ Graham, S Hess, ...
Proceedings of the National Academy of Sciences 111 (1), 433-438, 2014
622014
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Artículos 1–20