Tao Xu
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The proteomes of human parotid and submandibular/sublingual gland salivas collected as the ductal secretions
P Denny, FK Hagen, M Hardt, L Liao, W Yan, M Arellanno, S Bassilian, ...
Journal of proteome research 7 (5), 1994-2006, 2008
ProLuCID: An improved SEQUEST-like algorithm with enhanced sensitivity and specificity
T Xu, SK Park, JD Venable, JA Wohlschlegel, JK Diedrich, D Cociorva, ...
Journal of proteomics 129, 16-24, 2015
A quantitative analysis software tool for mass spectrometry–based proteomics
SK Park, JD Venable, T Xu, JR Yates III
Nature methods 5 (4), 319-322, 2008
Quantitative mass spectrometry identifies insulin signaling targets in C. elegans
MQ Dong, JD Venable, N Au, T Xu, SK Park, D Cociorva, JR Johnson, ...
Science 317 (5838), 660, 2007
Extremely Long-Lived Nuclear Pore Proteins in the Rat Brain
JN Savas, BH Toyama, T Xu, JR Yates, MW Hetzer
Science, 2012
ProLuCID, a fast and sensitive tandem mass spectra-based protein identification program
T Xu, JD Venable, SK Park, D Cociorva, B Lu, L Liao, J Wohlschlegel, ...
Molecular Cellular Proteomics 5, 2006
Proteomic analysis of Schistosoma mansoni egg secretions
CL Cass, JR Johnson, LL Califf, T Xu, HJ Hernandez, MJ Stadecker, ...
Molecular and biochemical parasitology 155 (2), 84-93, 2007
Atlas–a data warehouse for integrative bioinformatics
SP Shah, Y Huang, T Xu, MMS Yuen, J Ling, BFF Ouellette
BMC bioinformatics 6, 1-16, 2005
Calcium Signaling through CaMKII Regulates Hepatic Glucose Production in Fasting and Obesity
L Ozcan, CCL Wong, G Li, T Xu, U Pajvani, SKR Park, A Wronska, ...
Cell Metabolism, 2012
Quantitative proteomics approach for identifying protein–drug interactions in complex mixtures using protein stability measurements
GM West, CL Tucker, T Xu, SK Park, X Han, JR Yates III, MC Fitzgerald
Proceedings of the National Academy of Sciences 107 (20), 9078-9082, 2010
Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides
A Motoyama, T Xu, CI Ruse, JA Wohlschlegel, JR Yates III
Analytical chemistry 79 (10), 3623-3634, 2007
Quantitative proteomic analysis of primary neurons reveals diverse changes in synaptic protein content in fmr1 knockout mice
L Liao, SK Park, T Xu, P Vanderklish, JR Yates III
Proceedings of the National Academy of Sciences 105 (40), 15281-15286, 2008
Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis
GT Cantin, W Yi, B Lu, SK Park, T Xu, JD Lee, JR Yates Iii
Journal of proteome research 7 (3), 1346-1351, 2008
Human Proteinpedia enables sharing of human protein data
S Mathivanan, M Ahmed, NG Ahn, H Alexandre, R Amanchy, PC Andrews, ...
Nature biotechnology 26 (2), 164-167, 2008
Global analysis of posttranslational protein arginylation
CCL Wong, T Xu, R Rai, AO Bailey, JR Yates 3rd, YI Wolf, H Zebroski, ...
PLoS biology 5 (10), e258, 2007
Search Engine Processor: filtering and organizing PSMs
PC Carvalho, JSG Fischer, T Xu, D Cociorva, TS Balbuena, RH Valente, ...
Proteomics, 2012
BDNF induces widespread changes in synaptic protein content and up-regulates components of the translation machinery: an analysis using high-throughput proteomics
L Liao, J Pilotte, T Xu, CCL Wong, GM Edelman, P Vanderklish, ...
Journal of Proteome Research 6 (3), 1059-1071, 2007
XDIA: improving on the label-free data-independent analysis
PC Carvalho, X Han, T Xu, D Cociorva, M da Gloria Carvalho, ...
Bioinformatics 26 (6), 847-848, 2010
A cell cycle phosphoproteome of the yeast centrosome
JM Keck, MH Jones, CCL Wong, J Binkley, D Chen, SL Jaspersen, ...
Science 332 (6037), 1557-1561, 2011
Digestion and depletion of abundant proteins improves proteomic coverage
BR Fonslow, BD Stein, KJ Webb, T Xu, J Choi, SK Park, JR Yates III
Nature Methods 10 (1), 54-56, 2012
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