Jinbo Xu
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Opportunities And Obstacles For Deep Learning In Biology And Medicine
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
J R Soc Interface 15 (141), 2018
Template-based protein structure modeling using the RaptorX web server
M Källberg, H Wang, S Wang, J Peng, Z Wang, H Lu, J Xu
Nature protocols 7 (8), 1511-1522, 2012
Accurate de novo prediction of protein contact map by ultra-deep learning model
S Wang, S Sun, Z Li, R Zhang, J Xu
PLoS computational biology 13 (1), e1005324, 2017
Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model
S Wang, S Sun, Z Li, R Zhang, J Xu
PLOS Computational Biology 13 (1), e1005324, 2017
Global alignment of multiple protein interaction networks with application to functional orthology detection
R Singh, J Xu, B Berger
Proceedings of the National Academy of Sciences 105 (35), 12763-12768, 2008
Protein secondary structure prediction using deep convolutional neural fields
S Wang, J Peng, J Ma, J Xu
Scientific reports 6, 2016
RaptorX-Property: a web server for protein structure property prediction
S Wang, W Li, S Liu, J Xu
Nucleic acids research 44 (W1), W430-W435, 2016
RaptorX: exploiting structure information for protein alignment by statistical inference
J Peng, J Xu
Proteins: Structure, Function, and Bioinformatics 79 (S10), 161-171, 2011
Distance-based protein folding powered by deep learning
J Xu
Proceedings of the National Academy of Sciences 116 (34), 16856-16865, 2019
Pairwise global alignment of protein interaction networks by matching neighborhood topology
R Singh, J Xu, B Berger
Annual International Conference on Research in Computational Molecular …, 2007
Predicting the clinical impact of human mutation with deep neural networks
L Sundaram, H Gao, SR Padigepati, JF McRae, Y Li, JA Kosmicki, ...
Nature genetics 50 (8), 1161-1170, 2018
RAPTOR: optimal protein threading by linear programming
J Xu, M Li, D Kim, Y Xu
Journal of Bioinformatics and Computational Biology 1 (01), 95-117, 2003
Predicting protein–protein interactions through sequence-based deep learning
S Hashemifar, B Neyshabur, AA Khan, J Xu
Bioinformatics 34 (17), i802-i810, 2018
RaptorX server: a resource for template-based protein structure modeling
M Källberg, G Margaryan, S Wang, J Ma, J Xu
Protein Structure Prediction, 17-27, 2014
Identification of let-7–regulated oncofetal genes
B Boyerinas, SM Park, N Shomron, MM Hedegaard, J Vinther, ...
Cancer research 68 (8), 2587, 2008
Conditional neural fields
J Peng, L Bo, J Xu
Advances in neural information processing systems 22, 1419-1427, 2009
Critical assessment of protein intrinsic disorder prediction
M Necci, D Piovesan, CPJ Xu), DP Curators, SCE Tosatto
Nature Methods, 2021
Improved protein structure prediction by deep learning irrespective of co-evolution information
J Xu, M Mcpartlon, J Li
Nature Machine Intelligence, 2021
Protein structure alignment beyond spatial proximity
S Wang, J Ma, J Peng, J Xu
Scientific reports 3, 1448, 2013
Protein threading using context-specific alignment potential
J Ma, S Wang, F Zhao, J Xu
Bioinformatics 29 (13), i257-i265, 2013
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