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Joanne B. Emerson
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Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases
JM Brulc, DA Antonopoulos, ME Berg Miller, MK Wilson, AC Yannarell, ...
Proceedings of the National Academy of Sciences 106 (6), 1948-1953, 2009
8702009
Bacterial diversity in the oral cavity of 10 healthy individuals
EM Bik, CD Long, GC Armitage, P Loomer, J Emerson, EF Mongodin, ...
The ISME journal 4 (8), 962-974, 2010
8222010
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
5312019
Schrödinger’s microbes: tools for distinguishing the living from the dead in microbial ecosystems
JB Emerson, RI Adams, CMB Román, B Brooks, DA Coil, K Dahlhausen, ...
Microbiome 5, 1-23, 2017
4732017
Host-linked soil viral ecology along a permafrost thaw gradient
JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ...
Nature microbiology 3 (8), 870-880, 2018
468*2018
Seasonal variability in bacterial and fungal diversity of the near-surface atmosphere
RM Bowers, N Clements, JB Emerson, C Wiedinmyer, MP Hannigan, ...
Environmental science & technology 47 (21), 12097-12106, 2013
4072013
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities
P Narasingarao, S Podell, JA Ugalde, C Brochier-Armanet, JB Emerson, ...
The ISME journal 6 (1), 81-93, 2012
4022012
Genome-centric view of carbon processing in thawing permafrost
BJ Woodcroft, CM Singleton, JA Boyd, PN Evans, JB Emerson, ...
Nature 560 (7716), 49-54, 2018
3862018
Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
S Roux, JB Emerson, EA Eloe-Fadrosh, MB Sullivan
PeerJ 5, e3817, 2017
2862017
Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1
EF Mongodin, N Shapir, SC Daugherty, RT DeBoy, JB Emerson, ...
PLoS genetics 2 (12), e214, 2006
2832006
Differential depth distribution of microbial function and putative symbionts through sediment-hosted aquifers in the deep terrestrial subsurface
AJ Probst, B Ladd, JK Jarett, DE Geller-McGrath, CMK Sieber, ...
Nature microbiology 3 (3), 328-336, 2018
2622018
Insights into Plant Cell Wall Degradation from the Genome Sequence of the Soil Bacterium Cellvibrio japonicus
RT DeBoy, EF Mongodin, DE Fouts, LE Tailford, H Khouri, JB Emerson, ...
Journal of bacteriology 190 (15), 5455-5463, 2008
2332008
Soil viruses are underexplored players in ecosystem carbon processing
G Trubl, HB Jang, S Roux, JB Emerson, N Solonenko, DR Vik, L Solden, ...
MSystems 3 (5), 10.1128/msystems. 00076-18, 2018
2262018
Genomic resolution of a cold subsurface aquifer community provides metabolic insights for novel microbes adapted to high CO2 concentrations
AJ Probst, CJ Castelle, A Singh, CT Brown, K Anantharaman, I Sharon, ...
Environmental microbiology 19 (2), 459-474, 2017
2022017
Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
C Santos-Medellin, LA Zinke, AM Ter Horst, DL Gelardi, SJ Parikh, ...
The ISME journal 15 (7), 1956-1970, 2021
1412021
Solutions in microbiome engineering: prioritizing barriers to organism establishment
MBN Albright, S Louca, DE Winkler, KL Feeser, SJ Haig, KL Whiteson, ...
The ISME Journal 16 (2), 331-338, 2022
1222022
Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla
JB Emerson, BC Thomas, W Alvarez, JF Banfield
Environmental microbiology 18 (6), 1686-1703, 2016
1202016
Impacts of flood damage on airborne bacteria and fungi in homes after the 2013 Colorado Front Range flood
JB Emerson, PB Keady, TE Brewer, N Clements, EE Morgan, J Awerbuch, ...
Environmental science & technology 49 (5), 2675-2684, 2015
1162015
Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface
AJ Probst, T Weinmaier, K Raymann, A Perras, JB Emerson, T Rattei, ...
Nature communications 5 (1), 5497, 2014
1162014
Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly
JB Emerson, BC Thomas, K Andrade, EE Allen, KB Heidelberg, ...
Applied and environmental microbiology 78 (17), 6309-6320, 2012
1112012
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