Harish Nagarajan
Harish Nagarajan
Director, Systems Bioengineering at Genomatica
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The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line
X Xu, H Nagarajan, NE Lewis, S Pan, Z Cai, X Liu, W Chen, M Xie, ...
Nature biotechnology 29 (8), 735-741, 2011
Constraining the metabolic genotype–phenotype relationship using a phylogeny of in silico methods
NE Lewis, H Nagarajan, BO Palsson
Nature Reviews Microbiology 10 (4), 291-305, 2012
The microbiome extends to subepidermal compartments of normal skin
T Nakatsuji, HI Chiang, SB Jiang, H Nagarajan, K Zengler, RL Gallo
Nature communications 4, 1431, 2013
Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome
NE Lewis, X Liu, Y Li, H Nagarajan, G Yerganian, E O'Brien, A Bordbar, ...
Nature biotechnology 31 (8), 759-765, 2013
MS/MS networking guided analysis of molecule and gene cluster families
DD Nguyen, CH Wu, WJ Moree, A Lamsa, MH Medema, X Zhao, ...
Proceedings of the National Academy of Sciences 110 (28), E2611-E2620, 2013
A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism
H Hefzi, KS Ang, M Hanscho, A Bordbar, D Ruckerbauer, M Lakshmanan, ...
Cell Systems 3 (5), 434-443. e8, 2016
A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism
M Lakshmanan, CA Orellana, D Baycin-Hizal, Y Huang, D Ley, T Wulff, ...
Proteomic analysis of Chinese hamster ovary cells
D Baycin-Hizal, DL Tabb, R Chaerkady, L Chen, NE Lewis, H Nagarajan, ...
Journal of proteome research 11 (11), 5265-5276, 2012
Characterizing acetogenic metabolism using a genome-scale metabolic reconstruction of Clostridium ljungdahlii
H Nagarajan, M Sahin, J Nogales, H Latif, DR Lovley, A Ebrahim, ...
Microb Cell Fact 12, 118, 2013
Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling
D Kim, JS Hong, Y Qiu, H Nagarajan, JH Seo, BK Cho, SF Tsai, ...
PLoS Genet 8 (8), e1002867, 2012
Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community
M Embree, H Nagarajan, N Movahedi, H Chitsaz, K Zengler
The ISME journal 8 (4), 757-767, 2014
Characterization and modelling of interspecies electron transfer mechanisms and microbial community dynamics of a syntrophic association
H Nagarajan, M Embree, AE Rotaru, PM Shrestha, AM Feist, BŘ Palsson, ...
Nature communications 4, 2013
Exploiting adaptive laboratory evolution of Streptomyces clavuligerus for antibiotic discovery and overproduction
P Charusanti, NL Fong, H Nagarajan, AR Pereira, HJ Li, EA Abate, Y Su, ...
PLoS One 7 (3), e33727, 2012
Exploiting Adaptive Laboratory Evolution of Streptomyces clavuligerus for Antibiotic
P Charusanti, NL Fong, H Nagarajan, AR Pereira, HJ Li
Determining the control circuitry of redox metabolism at the genome-scale
S Federowicz, D Kim, A Ebrahim, J Lerman, H Nagarajan, BK Cho, ...
PLoS Genet 10 (4), e1004264, 2014
Do Genome-scale Models Need Exact Solvers or Clearer Standards?
A Ebrahim, E Almaas, E Bauer, A Bordbar, AP Burgard, RL Chang, ...
Molecular Systems Biology, 2015
Characterizing the interplay between multiple levels of organization within bacterial sigma factor regulatory networks
Y Qiu, H Nagarajan, M Embree, W Shieu, E Abate, K Juárez, BK Cho, ...
Nature communications 4, 1755, 2013
Minimal metabolic pathway structure is consistent with associated biomolecular interactions
A Bordbar, H Nagarajan, NE Lewis, H Latif, A Ebrahim, S Federowicz, ...
Molecular systems biology 10 (7), 737, 2014
The genome organization of Thermotoga maritima reflects its lifestyle
H Latif, JA Lerman, VA Portnoy, Y Tarasova, H Nagarajan, ...
Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens
AM Feist, H Nagarajan, AE Rotaru, PL Tremblay, T Zhang, KP Nevin, ...
PLoS Comput Biol 10, e1003575, 2014
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