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Adam Paul Arkin
Adam Paul Arkin
Department of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.O
Verified email at lbl.gov - Homepage
Title
Cited by
Cited by
Year
FastTree 2–approximately maximum-likelihood trees for large alignments
MN Price, PS Dehal, AP Arkin
PloS one 5 (3), e9490, 2010
136852010
Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression
LS Qi, MH Larson, LA Gilbert, JA Doudna, JS Weissman, AP Arkin, ...
Cell 152 (5), 1173-1183, 2013
60492013
Functional profiling of the Saccharomyces cerevisiae genome
G Giaever, AM Chu, L Ni, C Connelly, L Riles, S Véronneau, S Dow, ...
nature 418 (6896), 387-391, 2002
52252002
FastTree: computing large minimum evolution trees with profiles instead of a distance matrix
MN Price, PS Dehal, AP Arkin
Molecular biology and evolution 26 (7), 1641-1650, 2009
49902009
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ...
Bioinformatics 19 (4), 524-531, 2003
38652003
Stochastic mechanisms in gene expression
HH McAdams, A Arkin
Proceedings of the National Academy of Sciences 94 (3), 814-819, 1997
24741997
Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells
A Arkin, J Ross, HH McAdams
Genetics 149 (4), 1633-1648, 1998
21201998
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
13252018
Control, exploitation and tolerance of intracellular noise
CV Rao, DM Wolf, AP Arkin
Nature 420 (6912), 231-237, 2002
13062002
It’sa noisy business! Genetic regulation at the nanomolar scale
HH McAdams, A Arkin
Trends in genetics 15 (2), 65-69, 1999
11581999
Precise and reliable gene expression via standard transcription and translation initiation elements
VK Mutalik, JC Guimaraes, G Cambray, C Lam, MJ Christoffersen, QA Mai, ...
Nature methods 10 (4), 354-360, 2013
8892013
Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm
CV Rao, AP Arkin
The Journal of chemical physics 118 (11), 4999-5010, 2003
8442003
A quantitative framework reveals ecological drivers of grassland microbial community assembly in response to warming
D Ning, M Yuan, L Wu, Y Zhang, X Guo, X Zhou, Y Yang, AP Arkin, ...
Nature communications 11 (1), 4717, 2020
7932020
Environmentally controlled invasion of cancer cells by engineered bacteria
JC Anderson, EJ Clarke, AP Arkin, CA Voigt
Journal of molecular biology 355 (4), 619-627, 2006
7902006
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem
J Zhou, YE Deng, P Zhang, K Xue, Y Liang, JD Van Nostrand, Y Yang, ...
Proceedings of the National Academy of Sciences 111 (9), E836-E845, 2014
7782014
Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity
LS Weinberger, JC Burnett, JE Toettcher, AP Arkin, DV Schaffer
Cell 122 (2), 169-182, 2005
7532005
A genomic catalog of Earth’s microbiomes
S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ...
Nature biotechnology 39 (4), 499-509, 2021
7362021
Chemogenomic profiling: identifying the functional interactions of small molecules in yeast
G Giaever, P Flaherty, J Kumm, M Proctor, C Nislow, DF Jaramillo, ...
Proceedings of the National Academy of Sciences 101 (3), 793-798, 2004
6102004
Mutant phenotypes for thousands of bacterial genes of unknown function
MN Price, KM Wetmore, RJ Waters, M Callaghan, J Ray, H Liu, JV Kuehl, ...
Nature 557 (7706), 503-509, 2018
5562018
Environmental genomics reveals a single-species ecosystem deep within Earth
D Chivian, EL Brodie, EJ Alm, DE Culley, PS Dehal, TZ DeSantis, ...
Science 322 (5899), 275-278, 2008
5472008
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