| Site-specific structural constraints on protein sequence evolutionary divergence: local packing density versus solvent exposure SW Yeh, JW Liu, SH Yu, CH Shih, JK Hwang, J Echave Molecular Biology and Evolution 31 (1), 135-139, 2014 | 79 | 2014 |
| Isobaric matching between runs and novel PSM-level normalization in MaxQuant strongly improve reporter ion-based quantification SH Yu, P Kyriakidou, J Cox Journal of proteome research 19 (10), 3945-3954, 2020 | 77 | 2020 |
| ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes SH Yu, J Vogel, KU Förstner GigaScience 7 (9), giy096, 2018 | 76 | 2018 |
| pKNOT: the protein KNOT web server YL Lai, SC Yen, SH Yu, JK Hwang Nucleic acids research 35 (suppl_2), W420-W424, 2007 | 54 | 2007 |
| Local packing density is the main structural determinant of the rate of protein sequence evolution at site level SW Yeh, TT Huang, JW Liu, SH Yu, CH Shih, JK Hwang, J Echave BioMed research international 2014 (1), 572409, 2014 | 46 | 2014 |
| Effect of shear stress on Pseudomonas aeruginosa isolated from the cystic fibrosis lung J Dingemans, P Monsieurs, SH Yu, A Crabbé, KU Förstner, A Malfroot, ... MBio 7 (4), 10.1128/mbio. 00813-16, 2016 | 39 | 2016 |
| Expanding the perseus software for omics data analysis with custom plugins SH Yu, D Ferretti, JP Schessner, JD Rudolph, GHH Borner, J Cox Current protocols in bioinformatics 71 (1), e105, 2020 | 31 | 2020 |
| An RpoHI-dependent response promotes outgrowth after extended stationary phase in the alphaproteobacterium Rhodobacter sphaeroides B Remes, T Rische-Grahl, KMH Müller, KU Förstner, SH Yu, L Weber, ... Journal of Bacteriology 199 (14), 10.1128/jb. 00249-17, 2017 | 28 | 2017 |
| A simple way to compute protein dynamics without a mechanical model CH Shih, SW Huang, SC Yen, YL Lai, SH Yu, JK Hwang PROTEINS: Structure, Function, and Bioinformatics 68 (1), 34-38, 2007 | 28 | 2007 |
| Benchmarking differential expression, imputation and quantification methods for proteomics data MH Lin, PS Wu, TH Wong, IY Lin, J Lin, J Cox, SH Yu Briefings in Bioinformatics 23 (3), bbac138, 2022 | 27 | 2022 |
| On the relationship between catalytic residues and their protein contact number SW Huang, SH Yu, CH Shih, HW Guan, TT Huang, JK Hwang Current Protein and Peptide Science 12 (6), 574-579, 2011 | 16 | 2011 |
| ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes. Gigascience 7: giy096 SH Yu, J Vogel, KU Förstner | 10 | 2018 |
| Identification of BvgA-dependent and BvgA-independent small RNAs (sRNAs) in Bordetella pertussis using the prokaryotic sRNA prediction toolkit ANNOgesic K Moon, M Sim, CH Tai, K Yoo, C Merzbacher, SH Yu, DD Kim, J Lee, ... Microbiology Spectrum 9 (2), e00044-21, 2021 | 6 | 2021 |
| Development and application of computational tools for RNA-Seq based transcriptome annotations SH Yu PQDT-Global, 2018 | 2 | 2018 |
| Quantification Quality Control Emerges as a Crucial Factor to Enhance Single-Cell Proteomics Data Analysis SH Yu, SC Chen, PS Wu, PI Kuo, TA Chen, HY Lee, MH Lin Molecular & Cellular Proteomics 23 (5), 2024 | 1 | 2024 |
| Use of a combined antibacterial synergy approach and the ANNOgesic tool to identify novel targets within the gene networks of multidrug-resistant Klebsiella pneumoniae H Lee, SH Yu, JE Shim, D Yong Msystems 9 (3), e00877-23, 2024 | 1 | 2024 |
| Discovering Novel Bacterial Small RNA by RNA-seq Analysis Toolkit ANNOgesic CH Tai, D Hinton, SH Yu Bacterial Regulatory RNA: Methods and Protocols, 35-69, 2024 | | 2024 |
| The eQTL analysis to discover unique eGFR-related SNPs for the Taiwanese population PH Wu, J Lin, MC Kuo, SH Yu Journal of Nephrology 37 (1), 249-252, 2024 | | 2024 |
| Benchmarking dataset for optimizing differential expression analysis in label-free quantitative proteomic analysis PS Wu, SH Yu, MH Lin Journal of Proteome Data and Methods 5, 14, 2023 | | 2023 |
| 利用蛋白質結構預測蛋白質內的重要功能位置 于松桓， 黃鎮剛 | | 2007 |
Konrad U. FörstnerZB MED - Information Centre for Life Sciences & TH KölnVerified email at zbmed.de
