Neema Jamshidi
Neema Jamshidi
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The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ...
Nucleic acids research 33 (17), 5691-5702, 2005
Global reconstruction of the human metabolic network based on genomic and bibliomic data
NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ...
Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
Investigating the metabolic capabilities of Mycobacterium tuberculosis H37Rv using the in silico strain iNJ 661 and proposing alternative drug targets
N Jamshidi, BŲ Palsson
BMC systems biology 1, 1-20, 2007
Xanthine oxidase activity associated with arterial blood pressure in spontaneously hypertensive rats
H Suzuki, FA DeLano, DA Parks, N Jamshidi, DN Granger, H Ishii, ...
Proceedings of the National Academy of Sciences 95 (8), 4754-4759, 1998
Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions
A Bordbar, NE Lewis, J Schellenberger, BŲ Palsson, N Jamshidi
Molecular systems biology 6 (1), 422, 2010
Genome-Scale Reconstruction of Escherichia coli's Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its …
I Thiele, N Jamshidi, RMT Fleming, BŲ Palsson
PLoS computational biology 5 (3), e1000312, 2009
Behind the numbers: decoding molecular phenotypes with radiogenomics—guiding principles and technical considerations
MD Kuo, N Jamshidi
Radiology 270 (2), 320-325, 2014
Formulating genome‐scale kinetic models in the post‐genome era
N Jamshidi, BŲ Palsson
Molecular systems biology 4 (1), 171, 2008
A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1
MI Sigurdsson, N Jamshidi, E Steingrimsson, I Thiele, BŲ Palsson
BMC systems biology 4, 1-13, 2010
Mass action stoichiometric simulation models: incorporating kinetics and regulation into stoichiometric models
N Jamshidi, BŲ Palsson
Biophysical journal 98 (2), 175-185, 2010
Illuminating radiogenomic characteristics of glioblastoma multiforme through integration of MR imaging, messenger RNA expression, and DNA copy number variation
N Jamshidi, M Diehn, M Bredel, MD Kuo
Radiology 270 (1), 1-2, 2014
Dynamic simulation of the human red blood cell metabolic network
N Jamshidi, JS Edwards, T Fahland, GM Church, BO Palsson
Bioinformatics 17 (3), 286-287, 2001
Breast cancer: radiogenomic biomarker reveals associations among dynamic contrast-enhanced MR imaging, long noncoding RNA, and metastasis
S Yamamoto, W Han, Y Kim, L Du, N Jamshidi, D Huang, JH Kim, MD Kuo
Radiology 275 (2), 384-392, 2015
iAB-RBC-283: A proteomically derived knowledge-base of erythrocyte metabolism that can be used to simulate its physiological and patho-physiological states
A Bordbar, N Jamshidi, BO Palsson
BMC systems biology 5, 1-12, 2011
Personalized whole-cell kinetic models of metabolism for discovery in genomics and pharmacodynamics
A Bordbar, D McCloskey, DC Zielinski, N Sonnenschein, N Jamshidi, ...
Cell systems 1 (4), 283-292, 2015
Systems biology analysis of drivers underlying hallmarks of cancer cell metabolism
DC Zielinski, N Jamshidi, AJ Corbett, A Bordbar, A Thomas, BO Palsson
Scientific reports 7 (1), 41241, 2017
Nutritional systems biology modeling: from molecular mechanisms to physiology
AA de Graaf, AP Freidig, B De Roos, N Jamshidi, M Heinemann, ...
PLoS computational biology 5 (11), e1000554, 2009
Microelectronic array devices and techniques for electric field enhanced DNA hybridization in low‐conductance buffers
C Gurtner, E Tu, N Jamshidi, RW Haigis, TJ Onofrey, CF Edman, ...
Electrophoresis 23 (10), 1543-1550, 2002
The emerging facets of non-cancerous Warburg effect
AM Abdel-Haleem, NE Lewis, N Jamshidi, K Mineta, X Gao, T Gojobori
Frontiers in endocrinology 8, 279, 2017
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Articles 1–20