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Arvind K. Chavali
Arvind K. Chavali
Verified email at virginia.edu
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Cited by
Year
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
11862013
Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants
P Schläpfer, P Zhang, C Wang, T Kim, M Banf, L Chae, K Dreher, ...
Plant physiology 173 (4), 2041-2059, 2017
3482017
Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major
AK Chavali, JD Whittemore, JA Eddy, KT Williams, JA Papin
Molecular systems biology 4 (1), 177, 2008
1972008
The application of flux balance analysis in systems biology
EP Gianchandani, AK Chavali, JA Papin
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (3), 372-382, 2010
1922010
A metabolic network approach for the identification and prioritization of antimicrobial drug targets
AK Chavali*, KM D'Auria*, EL Hewlett, RD Pearson, JA Papin
Trends in microbiology 20 (3), 113-123, 2012
1302012
Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites
AK Chavali, SY Rhee
Briefings in bioinformatics 19 (5), 1022-1034, 2018
1152018
Characterizing emergent properties of immunological systems with multi-cellular rule-based computational modeling
AK Chavali*, EP Gianchandani*, KS Tung, MB Lawrence, SM Peirce, ...
Trends in immunology 29 (12), 589-599, 2008
1142008
Metabolic network analysis integrated with transcript verification for sequenced genomes
A Manichaikul, L Ghamsari, EFY Hom, C Lin, RR Murray, RL Chang, ...
Nature methods 6 (8), 589-592, 2009
1102009
Flux balance analysis: interrogating genome-scale metabolic networks
MA Oberhardt*, AK Chavali*, JA Papin
Systems Biology, 61-80, 2009
782009
Proteomic and network analysis characterize stage-specific metabolism in Trypanosoma cruzi
SB Roberts, JL Robichaux, AK Chavali, PA Manque, V Lee, AM Lara, ...
BMC systems biology 3, 1-15, 2009
612009
Metabolic network analysis predicts efficacy of FDA-approved drugs targeting the causative agent of a neglected tropical disease
AK Chavali, AS Blazier, JL Tlaxca, PA Jensen, RD Pearson, JA Papin
BMC systems biology 6, 1-16, 2012
572012
NF-κB-Chromatin Interactions Drive Diverse Phenotypes by Modulating Transcriptional Noise
VC Wong, VL Bass*, ME Bullock*, AK Chavali*, REC Lee, W Mothes, ...
Cell reports 22 (3), 585-599, 2018
522018
Intestinal epithelial cell up-regulation of LY6 molecules during colitis results in enhanced chemokine secretion
K Flanagan, Z Modrusan, J Cornelius, A Chavali, I Kasman, L Komuves, ...
The Journal of Immunology 180 (6), 3874-3881, 2008
422008
A passive-flow microfluidic device for imaging latent HIV activation dynamics in single T cells
R Ramji*, VC Wong*, AK Chavali*, LM Gearhart, K Miller-Jensen
Integrative Biology 7 (9), 998-1010, 2015
242015
Distinct promoter activation mechanisms modulate noise-driven HIV gene expression
AK Chavali, VC Wong, K Miller-Jensen
Scientific Reports 5, 17661, 2015
212015
Frugal innovation in bioengineering for the detection of infectious diseases
AK Chavali, R Ramji
Springer, 2018
152018
Linking genome-scale metabolic modeling and genome annotation
EM Blais, AK Chavali, JA Papin
Systems Metabolic Engineering: Methods and Protocols, 61-83, 2013
152013
Systems analysis of small signaling modules relevant to eight human diseases
KF Benedict, F Mac Gabhann, RK Amanfu, AK Chavali, EP Gianchandani, ...
Annals of biomedical engineering 39, 621-635, 2011
132011
Supplementary material I
AK Chavali, JD Whittemore, JA Eddy, KT Williams, JA Papin
12015
Moving clinical operations forward during a pandemic
S Ramanathan, R Du, M Martin, A Chavali
Applied Clinical Trials 29 (4), 2020
2020
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Articles 1–20