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Dinh Diep
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Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768-775, 2011
11962011
Recapitulation of premature ageing with iPSCs from Hutchinson–Gilford progeria syndrome
GH Liu, BZ Barkho, S Ruiz, D Diep, J Qu, SL Yang, AD Panopoulos, ...
Nature 472 (7342), 221-225, 2011
6302011
The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming
AD Panopoulos, O Yanes, S Ruiz, YS Kida, D Diep, R Tautenhahn, ...
Cell research 22 (1), 168-177, 2012
5862012
Genome-wide analysis reveals TET-and TDG-dependent 5-methylcytosine oxidation dynamics
L Shen, H Wu, D Diep, S Yamaguchi, AC D’Alessio, HL Fung, K Zhang, ...
Cell 153 (3), 692-706, 2013
5722013
Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA
S Guo, D Diep, N Plongthongkum, HL Fung, K Zhang, K Zhang
Nature genetics 49 (4), 635-642, 2017
4482017
Comparative cellular analysis of motor cortex in human, marmoset and mouse
TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ...
Nature 598 (7879), 111-119, 2021
3982021
The human tumor atlas network: charting tumor transitions across space and time at single-cell resolution
O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ...
Cell 181 (2), 236-249, 2020
3912020
Tet1 controls meiosis by regulating meiotic gene expression
S Yamaguchi, K Hong, R Liu, L Shen, A Inoue, D Diep, K Zhang, Y Zhang
Nature 492 (7429), 443-447, 2012
3572012
Advances in the profiling of DNA modifications: cytosine methylation and beyond
N Plongthongkum, DH Diep, K Zhang
Nature Reviews Genetics 15 (10), 647-661, 2014
2922014
A multimodal cell census and atlas of the mammalian primary motor cortex
Principal manuscript editors, Analysis coordination, ...
Nature 598 (7879), 86-102, 2021
2752021
Quantitative comparison of DNA methylation assays for biomarker development and clinical applications
Nature biotechnology 34 (7), 726-737, 2016
2422016
An atlas of healthy and injured cell states and niches in the human kidney
BB Lake, R Menon, S Winfree, Q Hu, R Melo Ferreira, K Kalhor, ...
Nature 619 (7970), 585-594, 2023
2012023
Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells
S Ruiz, D Diep, A Gore, AD Panopoulos, N Montserrat, N Plongthongkum, ...
Proceedings of the National Academy of Sciences 109 (40), 16196-16201, 2012
1972012
Multiscale Modeling of Metabolism and Macromolecular Synthesis in E. coli and Its Application to the Evolution of Codon Usage
I Thiele, RMT Fleming, R Que, A Bordbar, D Diep, BO Palsson
Public Library of Science 7 (9), e45635, 2012
1272012
Library-free methylation sequencing with bisulfite padlock probes
D Diep, N Plongthongkum, A Gore, HL Fung, R Shoemaker, K Zhang
Nature methods 9 (3), 270-272, 2012
1192012
Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse
TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ...
BioRxiv, 2020.03. 31.016972, 2020
742020
DNA methylation identifies genetically and prognostically distinct subtypes of myelodysplastic syndromes
B Reilly, TN Tanaka, D Diep, H Yeerna, P Tamayo, K Zhang, R Bejar
Blood advances 3 (19), 2845-2858, 2019
412019
Scalable dual-omics profiling with single-nucleus chromatin accessibility and mRNA expression sequencing 2 (SNARE-seq2)
N Plongthongkum, D Diep, S Chen, BB Lake, K Zhang
Nature Protocols 16 (11), 4992-5029, 2021
292021
A perceptual scaling approach to eyewitness identification
S Gepshtein, Y Wang, F He, D Diep, TD Albright
Nature communications 11 (1), 3380, 2020
272020
A multimodal cell census and atlas of the mammalian primary motor cortex
BRAIN Initiative Cell Census Network (BICCN), RS Adkins, AI Aldridge, ...
Biorxiv, 2020.10. 19.343129, 2020
222020
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