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Michele Filosi
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The concordance between RNA-seq and microarray data depends on chemical treatment and transcript abundance
C Wang, B Gong, PR Bushel, J Thierry-Mieg, D Thierry-Mieg, J Xu, ...
Nature biotechnology 32 (9), 926-932, 2014
5372014
Minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers
D Albanese, M Filosi, R Visintainer, S Riccadonna, G Jurman, ...
Bioinformatics 29 (3), 407-408, 2013
2192013
The person-to-person transmission landscape of the gut and oral microbiomes
M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ...
Nature 614 (7946), 125-135, 2023
1782023
Biomarkers for response in major depression: comparing paroxetine and venlafaxine from two randomised placebo-controlled clinical studies
L Carboni, DJ McCarthy, B Delafont, M Filosi, E Ivanchenko, E Ratti, ...
Translational psychiatry 9 (1), 182, 2019
712019
The HIM glocal metric and kernel for network comparison and classification
G Jurman, R Visintainer, M Filosi, S Riccadonna, C Furlanello
2015 IEEE international conference on data science and advanced analytics …, 2015
632015
Stability indicators in network reconstruction
M Filosi, R Visintainer, S Riccadonna, G Jurman, C Furlanello
PloS one 9 (2), e89815, 2014
232014
Transcriptome signatures from discordant sibling pairs reveal changes in peripheral blood immune cell composition in Autism Spectrum Disorder
M Filosi, T Kam-Thong, L Essioux, P Muglia, E Trabetti, W Spooren, ...
Translational Psychiatry 10 (1), 106, 2020
212020
Graph metrics as summary statistics for Approximate Bayesian Computation with application to network model parameter estimation
D Fay, AW Moore, K Brown, M Filosi, G Jurman
Journal of complex networks 3 (1), 52-83, 2015
202015
DTW-MIC coexpression networks from time-course data
S Riccadonna, G Jurman, R Visintainer, M Filosi, C Furlanello
Plos one 11 (3), e0152648, 2016
19*2016
A machine learning pipeline for discriminant pathways identification
A Barla, G Jurman, R Visintainer, M Squillario, M Filosi, S Riccadonna, ...
Computational Intelligence Methods for Bioinformatics and Biostatistics: 8th …, 2012
102012
The Italian autism network (ITAN): a resource for molecular genetics and biomarker investigations
P Muglia, M Filosi, L Da Ros, T Kam-Thong, F Nardocci, E Trabetti, E Ratti, ...
BMC psychiatry 18, 1-9, 2018
92018
cmine, minerva & minepy: a C engine for the MINE suite and its R and Python wrappers
D Albanese, M Filosi, R Visintainer, S Riccadonna, G Jurman, ...
stat 1050, 21, 2012
92012
A glocal distance for network comparison
G Jurman, R Visintainer, S Riccadonna, M Filosi, C Furlanello
arXiv preprint arXiv:1201.2931, 2012
92012
Stability indicators in network reconstruction
G Jurman, M Filosi, R Visintainer, S Riccadonna, C Furlanello
arXiv preprint arXiv:1209.1654, 2012
52012
Performing highly parallelized and reproducible GWAS analysis on biobank-scale data
S Schönherr, JF Schachtl-Riess, S Di Maio, M Filosi, M Mark, C Lamina, ...
NAR Genomics and Bioinformatics 6 (1), lqae015, 2024
42024
Natural SINEUP RNAs in Autism Spectrum Disorders: RAB11B-AS1 Dysregulation in a Neuronal CHD8 Suppression Model Leads to RAB11B Protein Increase
G Zarantonello, M Arnoldi, M Filosi, T Tebaldi, G Spirito, A Barbieri, ...
Frontiers in Genetics 12, 745229, 2021
42021
Transcriptome analysis of the zebrafish atoh7−/− Mutant, lakritz, highlights Atoh7‐dependent genetic networks with potential implications for human eye diseases
G Covello, FJ Rossello, M Filosi, F Gajardo, AL Duchemin, BF Tremonti, ...
FASEB BioAdvances 2 (7), 434, 2020
32020
Differential network analysis and graph classification: a glocal approach
G Jurman, M Filosi, S Riccadonna, R Visintainer, C Furlanello
Dynamics of Mathematical Models in Biology: Bringing Mathematics to Life, 17-30, 2016
32016
A machine learning pipeline for identification of discriminant pathways
A Barla, G Jurman, R Visintainer, M Squillario, M Filosi, S Riccadonna, ...
Springer Handbook of Bio-/Neuroinformatics, 951-968, 2014
32014
Candidate biomarkers from the integration of methylation and gene expression in discordant autistic sibling pairs
S Perini, M Filosi, E Domenici
Translational Psychiatry 13 (1), 109, 2023
22023
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Articles 1–20